GDF2
protein-codinggrowth differentiation factor 2, the group of Transforming growth factor beta superfamily
Gene summary
This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate gene expression. The encoded preproprotein is proteolytically processed to generate each subunit of the disulfide-linked homodimer. This protein regulates cartilage and bone development, angiogenesis and differentiation of cholinergic central nervous system neurons. Mutations in this gene are associated with hereditary hemorrhagic telangiectasia. [provided by RefSeq, Jul 2016]
MANE transcript
Inheritance
ClinVar variants
Top phenotype
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~5.1 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: SD
Disease ID:MONDO:0014217
Submitter: PanelApp Australia
Inheritance Pattern: AD
Disease ID:MONDO:0015924
Submitter: ClinGen
GDF2 encodes an endothelial cell specific circulating ligand, BMP9, that activates the BMP signalling pathway by promoting the phosphorylation of Smads 1/5/8 (David et al. 2007). To date, three publications have identified a total of 30 independent variants predicted to be deleterious of which eight predict premature truncation in the autosomal dominant form of pulmonary hypertension (Graf et al. 2018, Wang et al. 2019, Eyries et al. 2019). The gene disease relationship is supported by both mutation-specific in vitro studies (n=6), demonstration of aberrant BMP9 expression in patient cells (Wang et al, 2019), and rescue of PAH phenotypes by treatment of BMPR2 mutant mice with wild-type BMP9. No contradictory evidence has been reported. Recuration three years after the initial gene discovery report (March 16th, 2022) identified four additional PAH patients with heterozygous variants, three of which were missense variants with in vitro evidence of loss of function, and one nonsense variant (PMID 31661308, 33066286). Furthermore, a combined analysis of the PAH Biobank and the UK NIHR PAH cohort identified GDF2 as one of seven genes that were significantly associated with IPAH on a genome-wide basis (PMID 33971972). In summary, the evidence for GDF2 in the aetiology of pulmonary arterial hypertension is designated as definitive.
Inheritance Pattern: Unknown
Disease ID:MONDO:0014217
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AD
Disease ID:MONDO:0014217
Submitter: ClinGen
The relationship between *GDF2* (BMP9) and autosomal dominant Hereditary Hemorrhagic Telangiectasia, Type 5 (HHT5) was first reported by Wooderchak-Donahue et al. in 2013, PMID: 23972370). HHT is diagnosed by the presence of 3 or more of the Curacao criteria (PMID: 10751092); it is characterized by telangiectases and arteriovenous malformations (AVMs). Hallmark features are recurrent epistaxis due to telangiectases of the nasal mucosa; telangiectases on the lips, hands, and oral mucosa; and solid-organ AVMs, particularly of the lungs, liver, and brain. Variants in *GDF2* have been described to result in a vascular-anomaly syndrome phenotypically overlapping with HHT but there is a large phenotypic spectrum from patients meeting HHT as defined by the Curacao criteria to patients displaying only vascular defects with talengectasia and potential AVMs. Thus, the disorder may be more accurately described as "*GDF2* related HHT-like syndrome". Interestingly, individuals with heterozygous missense variants and biallelic loss of function variants have been described, suggesting possible differences in the molecular mechanisms behind the disease. BMP9 is a circulating vascular quiescence factor. It acts on the TGF-β receptor system by interacting with ACVRL1 and ENG. Variants in ACVRL1 and ENG are known to cause HHT. Evidence supporting this gene-disease relationship includes case-level data and experimental data. In total, 10 variants were scored (missense and frameshift) from 10 probands reported in 8 publications (PMIDs: 23972370, 27081547, 32669404, 34904380, 34611981, 39151291, 40429357, 40930918). This gene-disease relationship is further supported by animal models, protein interaction with ACVRL1 and biochemical function. A number of mouse models have been developed to explore the relationship between BMP9 and HHT. Many show that BMP9 KO mice are phenotypically healthy compared to WT. However, in the 129/Ola background, the deletion of Bmp9 is sufficient to induce spontaneous AVMs (PMID: 38502919). In summary, *GDF2* is moderately associated with autosomal dominant hereditary hemorrhagic telangiectasia, type 5. While more evidence is needed to establish this relationship definitively, no convincing contradictory evidence has emerged. This classification was originally approved by the ClinGen Hemostasis/Thrombosis Gene Curation Expert Panel on 04/03/2023 (SOP Version 9). It was reevaluated on 06/01/2026 and while new genetic (PMID: 39151291, 40429357, 40930918) and experimental (PMID: 38502919) evidence was identified, it remained at a Moderate classification. Of note, GDF2 is also definitively associated with pulmonary arterial hypertension (PAH) and was independently evaluated as of May 26, 2022 by the Pulmonary Hypertension GCEP.
Inheritance Pattern: AR
Disease ID:MONDO:0014217
Submitter: Ambry Genetics
Inheritance Pattern: AD
Disease ID:MONDO:0014217
Submitter: G2P
Inheritance Pattern: AD
Disease ID:MONDO:0014217
Submitter: Ambry Genetics
Inheritance Pattern: AD
Disease ID:MONDO:0008535
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AD
Disease ID:MONDO:0019180
Submitter: Orphanet
Clinical Genomic Database (CGD)
Manifestation: Cardiovascular; Dermatologic; Gastrointestinal; Hematologic; Pulmonary
Intervention: Cardiovascular; Gastrointestinal; Hematologic; Obstetric; Pharmacogenomic; Pulmonary
Rationale: There are a number of surveillance/preventive/treatment based measures; These include: epistaxis treatment with humidification, lubricants, hormone therapy, anti-fibrinolytic agents, ablation, surgery, etc.; GI bleeding: iron replacement, hormonal or anti-fibrinolytic medication, surgery, etc.; Pulmonary AVM: catheter occlusion, and preventive measures such as antibiotic prophylaxis; symptomatic cerebral AVMs: surgery/embolotherapy, etc; Severe hepatic AVMs: liver transplantation if medical management fails; Specific pregnancy-related screening may be indicated; Anemia: Iron replacement or transfusion; Avoidance of certain activities and use of anticoagulant and anti-inflammatory agents (including aspirin) in the case of significant bleeding; For PAH, medical therapy (eg, prostanoids, endothelin receptor antagonists, etc.) may be beneficial, but lung transplantation may be indicated
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to GDF2 variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_016204.4. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 1 | 178 | 179 | |||
| missense | 6 | 109 | 44 | 159 | ||
| nonsense | 3 | 5 | 1 | 9 | ||
| start loss | 0 | |||||
| frameshift | 4 | 3 | 2 | 9 | ||
| splice donor/acceptor (+/-2bp) | 0 | |||||
| Total | 7 | 14 | 113 | 222 | 0 | 356 |
Highest pathogenic variant AF is 0.000022316199
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_057288.1 | 2 | MANE Select | |
| Ensembl | ENSP00000463051.1 | 2 | MANE Select | |
| Ensembl | ENSP00000788030.1 | 2 | Standard | |
| Ensembl | ENSP00000814296.1 | 2 | Standard |
Model Organisms & Knockout Phenotypes
Observed phenotypic effects in mouse and zebrafish models
| Gene / Model | Organism | Observed Phenotype |
|---|---|---|
| gdf2 | Danio rerio | Structure: caudal vein plexus Quality: immature abnormal |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Signal Transduction
- GPCR signaling-G alpha q
- GPCR signaling-cholera toxin
- GPCR signaling-pertussis toxin
- TGF-beta super family signaling pathway canonical
Biological Process
- ossification
- angiogenesis
- branching involved in blood vessel morphogenesis
- vasculogenesis
- osteoblast differentiation
Molecular Function
- cytokine activity
- transforming growth factor beta receptor binding
- protein binding
- growth factor activity
Cellular Component
- extracellular region
- extracellular space
- cell
- extracellular exosome
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Potent circulating inhibitor of angiogenesis. Signals through the type I activin receptor ACVRL1 but not other Alks. Signaling through SMAD1 in endothelial cells requires TGF-beta coreceptor endoglin/ENG. {ECO:0000269|PubMed:18309101, ECO:0000269|PubMed:21710321, ECO:0000269|PubMed:22799562, ECO:0000269|PubMed:23300529, ECO:0000269|PubMed:25237187}.;
- Disease
- DISEASE: Telangiectasia, hereditary hemorrhagic, 5 (HHT5) [MIM:615506]: A multisystemic vascular dysplasia leading to dilation of permanent blood vessels and arteriovenous malformations of skin, mucosa, and viscera. The disease is characterized by recurrent epistaxis and gastro-intestinal hemorrhage. Visceral involvement includes arteriovenous malformations of the lung, liver, and brain. {ECO:0000269|PubMed:23972370}. Note=The disease is caused by mutations affecting the gene represented in this entry.;
Recessive Scores
- pRec
- 0.221
Intolerance Scores
- LoFtool
- 0.113
- RVIS EVS
- -0.38
- RVIS percentile EVS
- 27.88
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Essential (gene trap)
- N
- Indispensability pred.
- N
- Indispensability score
- 0.485
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |