GDF2

protein-coding

growth differentiation factor 2, the group of Transforming growth factor beta superfamily

Gene summary

This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate gene expression. The encoded preproprotein is proteolytically processed to generate each subunit of the disulfide-linked homodimer. This protein regulates cartilage and bone development, angiogenesis and differentiation of cholinergic central nervous system neurons. Mutations in this gene are associated with hereditary hemorrhagic telangiectasia. [provided by RefSeq, Jul 2016]

MANE transcript

NM_016204.4

Inheritance

SD, AD, AR

ClinVar variants

P:21U:113B:222

Top phenotype

Hereditary hemorrhagic telangiectasia, type 5

Max pathogenic AF

—

Genomic locus

chr10:47,322,454-47,327,588

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~5.1 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

telangiectasia, hereditary hemorrhagic, type 5STRONG

Inheritance Pattern: SD

Disease ID:MONDO:0014217

Submitter: PanelApp Australia

pulmonary arterial hypertensionDEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0015924

Submitter: ClinGen

GDF2 encodes an endothelial cell specific circulating ligand, BMP9, that activates the BMP signalling pathway by promoting the phosphorylation of Smads 1/5/8 (David et al. 2007). To date, three publications have identified a total of 30 independent variants predicted to be deleterious of which eight predict premature truncation in the autosomal dominant form of pulmonary hypertension (Graf et al. 2018, Wang et al. 2019, Eyries et al. 2019). The gene disease relationship is supported by both mutation-specific in vitro studies (n=6), demonstration of aberrant BMP9 expression in patient cells (Wang et al, 2019), and rescue of PAH phenotypes by treatment of BMPR2 mutant mice with wild-type BMP9. No contradictory evidence has been reported. Recuration three years after the initial gene discovery report (March 16th, 2022) identified four additional PAH patients with heterozygous variants, three of which were missense variants with in vitro evidence of loss of function, and one nonsense variant (PMID 31661308, 33066286). Furthermore, a combined analysis of the PAH Biobank and the UK NIHR PAH cohort identified GDF2 as one of seven genes that were significantly associated with IPAH on a genome-wide basis (PMID 33971972). In summary, the evidence for GDF2 in the aetiology of pulmonary arterial hypertension is designated as definitive.

telangiectasia, hereditary hemorrhagic, type 5LIMITED

Inheritance Pattern: Unknown

Disease ID:MONDO:0014217

Submitter: Labcorp Genetics (formerly Invitae)

telangiectasia, hereditary hemorrhagic, type 5MODERATE

Inheritance Pattern: AD

Disease ID:MONDO:0014217

Submitter: ClinGen

The relationship between *GDF2* (BMP9) and autosomal dominant Hereditary Hemorrhagic Telangiectasia, Type 5 (HHT5) was first reported by Wooderchak-Donahue et al. in 2013, PMID: 23972370). HHT is diagnosed by the presence of 3 or more of the Curacao criteria (PMID: 10751092); it is characterized by telangiectases and arteriovenous malformations (AVMs). Hallmark features are recurrent epistaxis due to telangiectases of the nasal mucosa; telangiectases on the lips, hands, and oral mucosa; and solid-organ AVMs, particularly of the lungs, liver, and brain. Variants in *GDF2* have been described to result in a vascular-anomaly syndrome phenotypically overlapping with HHT but there is a large phenotypic spectrum from patients meeting HHT as defined by the Curacao criteria to patients displaying only vascular defects with talengectasia and potential AVMs. Thus, the disorder may be more accurately described as "*GDF2* related HHT-like syndrome". Interestingly, individuals with heterozygous missense variants and biallelic loss of function variants have been described, suggesting possible differences in the molecular mechanisms behind the disease. BMP9 is a circulating vascular quiescence factor. It acts on the TGF-β receptor system by interacting with ACVRL1 and ENG. Variants in ACVRL1 and ENG are known to cause HHT. Evidence supporting this gene-disease relationship includes case-level data and experimental data. In total, 10 variants were scored (missense and frameshift) from 10 probands reported in 8 publications (PMIDs: 23972370, 27081547, 32669404, 34904380, 34611981, 39151291, 40429357, 40930918). This gene-disease relationship is further supported by animal models, protein interaction with ACVRL1 and biochemical function. A number of mouse models have been developed to explore the relationship between BMP9 and HHT. Many show that BMP9 KO mice are phenotypically healthy compared to WT. However, in the 129/Ola background, the deletion of Bmp9 is sufficient to induce spontaneous AVMs (PMID: 38502919). In summary, *GDF2* is moderately associated with autosomal dominant hereditary hemorrhagic telangiectasia, type 5. While more evidence is needed to establish this relationship definitively, no convincing contradictory evidence has emerged. This classification was originally approved by the ClinGen Hemostasis/Thrombosis Gene Curation Expert Panel on 04/03/2023 (SOP Version 9). It was reevaluated on 06/01/2026 and while new genetic (PMID: 39151291, 40429357, 40930918) and experimental (PMID: 38502919) evidence was identified, it remained at a Moderate classification. Of note, GDF2 is also definitively associated with pulmonary arterial hypertension (PAH) and was independently evaluated as of May 26, 2022 by the Pulmonary Hypertension GCEP.

telangiectasia, hereditary hemorrhagic, type 5LIMITED

Inheritance Pattern: AR

Disease ID:MONDO:0014217

Submitter: Ambry Genetics

telangiectasia, hereditary hemorrhagic, type 5LIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0014217

Submitter: G2P

telangiectasia, hereditary hemorrhagic, type 5MODERATE

Inheritance Pattern: AD

Disease ID:MONDO:0014217

Submitter: Ambry Genetics

telangiectasia, hereditary hemorrhagic, type 1STRONG

Inheritance Pattern: AD

Disease ID:MONDO:0008535

Submitter: Labcorp Genetics (formerly Invitae)

hereditary hemorrhagic telangiectasiaSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0019180

Submitter: Orphanet

Clinical Genomic Database (CGD)

Hereditary hemorrhagic telangiectasia, type 5AD

Manifestation: Cardiovascular; Dermatologic; Gastrointestinal; Hematologic; Pulmonary

Intervention: Cardiovascular; Gastrointestinal; Hematologic; Obstetric; Pharmacogenomic; Pulmonary

Rationale: There are a number of surveillance/preventive/treatment based measures; These include: epistaxis treatment with humidification, lubricants, hormone therapy, anti-fibrinolytic agents, ablation, surgery, etc.; GI bleeding: iron replacement, hormonal or anti-fibrinolytic medication, surgery, etc.; Pulmonary AVM: catheter occlusion, and preventive measures such as antibiotic prophylaxis; symptomatic cerebral AVMs: surgery/embolotherapy, etc; Severe hepatic AVMs: liver transplantation if medical management fails; Specific pregnancy-related screening may be indicated; Anemia: Iron replacement or transfusion; Avoidance of certain activities and use of anticoagulant and anti-inflammatory agents (including aspirin) in the case of significant bleeding; For PAH, medical therapy (eg, prostanoids, endothelin receptor antagonists, etc.) may be beneficial, but lung transplantation may be indicated

Refs: 23972370Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to GDF2 variants in ClinVar

9 Conditions Cataloged
Telangiectasia, hereditary hemorrhagic, type 5Total: 244
Cardiovascular phenotypeTotal: 221
not providedTotal: 53
not specifiedTotal: 30
GDF2-related disorderTotal: 23
Pulmonary arterial hypertensionTotal: 3
Heritable pulmonary arterial hypertensionTotal: 1
GDF2-related vasculopathyTotal: 1

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_016204.4. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
178
clinvar
179
missense
6
clinvar
109
clinvar
44
clinvar
159
nonsense
3
clinvar
5
clinvar
1
clinvar
9
start loss
0
frameshift
4
clinvar
3
clinvar
2
clinvar
9
splice donor/acceptor (+/-2bp)
0
Total7141132220356

Highest pathogenic variant AF is 0.000022316199

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 4 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_016204.4RefSeqNP_057288.12MANE Select
ENST00000581492.3EnsemblENSP00000463051.12MANE Select
ENST00001118225.1EnsemblENSP00000788030.12Standard
ENST00001141686.1EnsemblENSP00000814296.12Standard

Model Organisms & Knockout Phenotypes

Observed phenotypic effects in mouse and zebrafish models

Gene / ModelOrganismObserved Phenotype
gdf2Danio rerio

Structure: caudal vein plexus

Quality: immature

abnormal

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Signal Transduction
  • GPCR signaling-G alpha q
  • GPCR signaling-cholera toxin
  • GPCR signaling-pertussis toxin
  • TGF-beta super family signaling pathway canonical

Biological Process

  • ossification
  • angiogenesis
  • branching involved in blood vessel morphogenesis
  • vasculogenesis
  • osteoblast differentiation

Molecular Function

  • cytokine activity
  • transforming growth factor beta receptor binding
  • protein binding
  • growth factor activity

Cellular Component

  • extracellular region
  • extracellular space
  • cell
  • extracellular exosome

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Potent circulating inhibitor of angiogenesis. Signals through the type I activin receptor ACVRL1 but not other Alks. Signaling through SMAD1 in endothelial cells requires TGF-beta coreceptor endoglin/ENG. {ECO:0000269|PubMed:18309101, ECO:0000269|PubMed:21710321, ECO:0000269|PubMed:22799562, ECO:0000269|PubMed:23300529, ECO:0000269|PubMed:25237187}.;
Disease
DISEASE: Telangiectasia, hereditary hemorrhagic, 5 (HHT5) [MIM:615506]: A multisystemic vascular dysplasia leading to dilation of permanent blood vessels and arteriovenous malformations of skin, mucosa, and viscera. The disease is characterized by recurrent epistaxis and gastro-intestinal hemorrhage. Visceral involvement includes arteriovenous malformations of the lung, liver, and brain. {ECO:0000269|PubMed:23972370}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.221

Intolerance Scores

LoFtool
0.113
RVIS EVS
-0.38
RVIS percentile EVS
27.88

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
N
Indispensability score
0.485

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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