GLDN

protein-coding

gliomedin

Gene summary

This gene encodes a protein that contains olfactomedin-like and collagen-like domains. The encoded protein, which exists in both transmembrane and secreted forms, promotes formation of the nodes of Ranvier in the peripheral nervous system. Mutations in this gene cause a form of lethal congenital contracture syndrome in human patients. Autoantibodies to the encoded protein have been identified in sera form patients with multifocal motor neuropathy. [provided by RefSeq, May 2017]

Previous symbols:
  • COLM

MANE transcript

NM_181789.4

Inheritance

AR

ClinVar variants

P:36U:101B:32

Top phenotype

Lethal congenital contracture syndrome 11

gnomAD constraint

pLI —, LoF o/e 0.88

Max pathogenic AF

—

Genomic locus

chr15:51,341,655-51,408,005

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~66.4 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

lethal congenital contracture syndrome 11DEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0014965

Submitter: ClinGen

GLDN encodes gliomedin, a Schwann cell–secreted adhesion protein required for the initiation and stabilization of nodes of Ranvier through interactions with axonal Neurofascin-186 (NF186) and Schwann cell NrCAM. This process is essential for clustering sodium channels and establishing normal peripheral nerve conduction. The gene–disease association was first established by Maluenda et al., (PMID: 27616481) who identified biallelic GLDN variants in individuals with fetal akinesia and congenital contractures. Since the initial description, multiple unrelated families have been reported with nonsense, frameshift, canonical splice, and missense variants segregating with disease in an autosomal recessive pattern. Many pathogenic variants localize to the conserved extracellular olfactomedin domain critical for NF186 binding (PMIDs: 28726266, 35806855, 39713852). Multiple recurrent and non-recurrent variants comprising missense, nonsense, frameshift, and splice variants have been reported in affected individuals, some of which segregated with disease in multiple affected individuals within families. Variants from more than 10 independent publications have been scored as part of this curation and the maximum score for genetic evidence (+12pts) has been reached. The mechanism of pathogenicity is loss of function, and in vitro studies demonstrate that pathogenic GLDN variants impair gliomedin trafficking to the cell surface and abolish NF186 binding (PMID: 27616481). Mouse models lacking gliomedin show disrupted Schwann cell microvilli organization and failure of early sodium channel clustering at heminodes without defects in myelination (PMID: 20188654). Double knockout mice lacking both gliomedin and NrCAM show nodal defects and motor abnormalities closely mirroring the human phenotype (PMID: 24719088). Prenatal ultrasound findings commonly include polyhydramnios, decreased or absent fetal movements, arthrogryposis multiplex congenita, fixed limb joints, short long bones, hydrops fetalis, and pulmonary hypoplasia, with detection often late in gestation (mean 30-32 weeks) (PMID: 35806855). Outcomes include neonatal death, elective termination, or survival with significant respiratory and neuromuscular morbidity. Although initially described as uniformly lethal, later reports demonstrate phenotypic variability, with survival beyond infancy and into adolescence documented in a subset of individuals receiving intensive supportive care (PMIDs: 35806855, 39713852). These observations support a continuous phenotypic spectrum rather than distinct disease entities. In summary, the Prenatal Gene Curation Expert Panel concludes that GLDN has DEFINITIVE evidence for autosomal recessive Lethal Congenital Contracture Syndrome 11. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time. This classification was approved by the ClinGen Prenatal GCEP on the meeting date 11/18/2025 (SOP Version 11).

lethal congenital contracture syndrome 11STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0014965

Submitter: PanelApp Australia

lethal congenital contracture syndrome 11STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0014965

Submitter: G2P

lethal congenital contracture syndrome 11STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0014965

Submitter: Ambry Genetics

lethal congenital contracture syndrome 11STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0014965

Submitter: Labcorp Genetics (formerly Invitae)

Clinical Genomic Database (CGD)

Lethal congenital contracture syndrome 11AR

Manifestation: Neurologic; Musculoskeletal

Intervention: General

Rationale: Genetic knowledge may be beneficial related to issues such as selection of optimal supportive care, informed medical decision-making, prognostic considerations, and avoidance of unnecessary testing

Refs: 27616481Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to GLDN variants in ClinVar

14 Conditions Cataloged
Inborn genetic diseasesTotal: 94
Lethal congenital contracture syndrome 11Total: 37
not providedTotal: 32
GLDN-related disorderTotal: 24
not specifiedTotal: 11
GLDN-related disordersTotal: 3
Fetal akinesia deformation sequence 1Total: 3
PolyhydramniosTotal: 3

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_181789.4. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
14
clinvar
2
clinvar
16
missense
13
clinvar
97
clinvar
13
clinvar
2
clinvar
125
nonsense
1
clinvar
7
clinvar
8
start loss
0
frameshift
3
clinvar
7
clinvar
1
clinvar
11
splice donor/acceptor (+/-2bp)
1
clinvar
4
clinvar
3
clinvar
1
clinvar
9
Total531101284169

Highest pathogenic variant AF is 0.00007627112

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 21 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_181789.4RefSeqNP_861454.210MANE Select
ENST00000335449.11EnsemblENSP00000335196.610MANE Select
NM_001330297.2RefSeqNP_001317226.19Standard
ENST00000396399.6EnsemblENSP00000379681.29Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Biological Process

  • microvillus organization
  • heterotypic cell-cell adhesion
  • clustering of voltage-gated sodium channels

Molecular Function

  • protein binding involved in heterotypic cell-cell adhesion

Cellular Component

  • collagen trimer
  • extracellular space
  • plasma membrane
  • integral component of membrane
  • axon

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000335449
Coding exons
10
Length
66385
Individuals with no LoFs
125675
Homozygous LoFs
0
Heterozygous LoFs
73
Defined
125748
p
0.000290
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense-0.1303032971.020.00001453529
Missense (PolyPhen)95100.630.944051204
Synonymous-1.071331181.130.000006541109
Loss of Function0.5252123.80.8840.00000124283

Population LoF Frequency

PopulationCAFp-valueStatus
African0.000200.00018rare
Latino/Admixed American0.000150.00014rare
Ashkenazi Jewish00.0absent
East Asian0.000540.00054rare
Finnish00.0absent
European (Non-Finnish)0.000320.00032rare
South Asian0.000530.00052rare
Other0.000520.00049rare

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Ligand for NRCAM and NFASC/neurofascin that plays a role in the formation and maintenance of the nodes of Ranvier on myelinated axons. Mediates interaction between Schwann cell microvilli and axons via its interactions with NRCAM and NFASC. Nodes of Ranvier contain clustered sodium channels that are crucial for the saltatory propagation of action potentials along myelinated axons. During development, nodes of Ranvier are formed by the fusion of two heminodes. Required for normal clustering of sodium channels at heminodes; not required for the formation of mature nodes with normal sodium channel clusters. Required, together with NRCAM, for maintaining NFASC and sodium channel clusters at mature nodes of Ranvier. {ECO:0000250|UniProtKB:Q8BMF8}.;
Disease
DISEASE: Lethal congenital contracture syndrome 11 (LCCS11) [MIM:617194]: A form of lethal congenital contracture syndrome, an autosomal recessive disorder characterized by degeneration of anterior horn neurons, extreme skeletal muscle atrophy and congenital non-progressive joint contractures. The contractures can involve the upper or lower limbs and/or the vertebral column, leading to various degrees of flexion or extension limitations evident at birth. {ECO:0000269|PubMed:27616481}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.101

Intolerance Scores

LoFtool
0.263
RVIS EVS
1.42
RVIS percentile EVS
94.92

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
N
Indispensability score
0.110

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumHigh
CancerMediumMediumMedium
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