LINC00592

long intergenic non-protein coding RNA 592, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 12:52164115-52223880

Links

ENSG00000258279 ∙ NCBI:283404 ∙ ∙ HGNC:27474 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC00592 gene.

• Inborn genetic diseases (32 variants)
• not provided (3 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC00592 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			32		3	35
Total	0	0	32	0	3

Variants in LINC00592

This is a list of pathogenic ClinVar variants found in the LINC00592 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
12-52171420-T-C		not specified	Uncertain significance (Dec 03, 2024)
12-52171426-A-C		not specified	Uncertain significance (Aug 12, 2022)
12-52171427-A-C		not specified	Uncertain significance (Sep 26, 2022)
12-52171439-A-T		not specified	Uncertain significance (Oct 24, 2024)
12-52171440-C-G		not specified	Uncertain significance (Aug 04, 2024)
12-52171460-C-T		not specified	Uncertain significance (Jan 09, 2024)
12-52171522-G-A		not specified	Uncertain significance (Mar 24, 2023)
12-52171682-C-T		not specified	Uncertain significance (Apr 13, 2022)
12-52171710-C-T		not specified	Uncertain significance (May 26, 2022)
12-52172294-C-T		not specified	Uncertain significance (Jul 10, 2023)
12-52172295-G-A		not specified	Uncertain significance (Sep 27, 2021)
12-52172324-G-A		not specified	Uncertain significance (Oct 08, 2024)
12-52172340-C-A		not specified	Uncertain significance (Aug 04, 2021)
12-52173066-C-T		not specified	Uncertain significance (May 20, 2024)
12-52173082-G-A		not specified	Uncertain significance (Mar 06, 2023)
12-52173097-C-T		not specified	Uncertain significance (May 11, 2022)
12-52173101-C-G		not specified	Uncertain significance (Dec 17, 2023)
12-52173104-G-T		not specified	Uncertain significance (Jul 06, 2021)
12-52173109-G-A		not specified	Uncertain significance (May 29, 2024)
12-52173142-A-T		not specified	Uncertain significance (Jan 18, 2023)
12-52173145-G-T		not specified	Uncertain significance (May 24, 2024)
12-52173638-G-A		not specified	Uncertain significance (Mar 11, 2024)
12-52173643-G-A		not specified	Uncertain significance (Mar 25, 2024)
12-52173677-C-T		not specified	Uncertain significance (Oct 02, 2023)
12-52173685-C-T		not specified	Uncertain significance (Aug 05, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP