LINC01126

long intergenic non-protein coding RNA 1126, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 2:43219805-43233464

Links

ENSG00000279873 ∙ NCBI:100129726 ∙ ∙ HGNC:49275 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC01126 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC01126 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC01126

This is a list of pathogenic ClinVar variants found in the LINC01126 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
2-43224377-C-CT			not provided (-)
2-43224423-T-G		not specified	Uncertain significance (Dec 01, 2022)
2-43224463-G-A			Likely benign (Nov 01, 2024)
2-43224480-C-A		not specified	Uncertain significance (Jul 14, 2024)
2-43224497-C-G		not specified	Uncertain significance (Oct 09, 2024)
2-43224514-G-C		not specified	Uncertain significance (Jan 09, 2024)
2-43224525-G-A		not specified	Uncertain significance (Aug 28, 2024)
2-43224533-G-A		not specified	Uncertain significance (Feb 06, 2025)
2-43224534-G-A		not specified	Uncertain significance (Dec 13, 2023)
2-43224546-C-G		not specified	Uncertain significance (Mar 06, 2023)
2-43224570-G-A		not specified	Uncertain significance (Jun 04, 2024)
2-43224572-G-A		not specified	Uncertain significance (Aug 02, 2022)
2-43224577-C-T		ZFP36L2-related disorder	Likely benign (Dec 26, 2019)
2-43224599-C-A		not specified	Uncertain significance (May 31, 2023)
2-43224616-C-G		not specified	Uncertain significance (Aug 30, 2022)
2-43224627-G-A		not specified	Uncertain significance (Feb 16, 2023)
2-43224634-G-A		ZFP36L2-related disorder	Likely benign (Jul 12, 2019)
2-43224644-G-A		not specified	Uncertain significance (Feb 14, 2023)
2-43224675-C-G		not specified	Uncertain significance (Nov 30, 2022)
2-43224678-G-A		not specified	Uncertain significance (Nov 10, 2024)
2-43224681-G-A		not specified	Uncertain significance (Mar 15, 2024)
2-43224708-C-T		not specified	Uncertain significance (Jan 07, 2025)
2-43224713-G-A		not specified	Uncertain significance (Dec 01, 2022)
2-43224714-C-T		not specified	Uncertain significance (Nov 08, 2022)
2-43224737-G-A		not specified	Uncertain significance (Jan 23, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP