THUMPD3-AS1
Basic information
Region (hg38): 3:9349689-9398625
Previous symbols: [ "SETD5-AS1" ]
Links
Phenotypes
GenCC
Source:
ClinVar
This is a list of variants' phenotypes submitted to
- Inborn genetic diseases (26 variants)
Variants pathogenicity by type
Statistics on ClinVar variants can assist in determining whether a specific variant type in the THUMPD3-AS1 gene is commonly pathogenic or not.
In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.
Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.
| Variant type | Pathogenic | Likely pathogenic | VUS | Likely benign | Benign | Sum |
|---|---|---|---|---|---|---|
| synonymous | 0 | |||||
| missense | 0 | |||||
| nonsense | 0 | |||||
| start loss | 0 | |||||
| frameshift | 0 | |||||
| inframe indel | 0 | |||||
| splice donor/acceptor (+/-2bp) | 0 | |||||
| splice region | 0 | |||||
| non coding | 24 | 26 | ||||
| Total | 0 | 0 | 24 | 2 | 0 |
Variants in THUMPD3-AS1
This is a list of pathogenic ClinVar variants found in the THUMPD3-AS1 region.
You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.
| Position | Type | Phenotype | Significance | ClinVar |
|---|---|---|---|---|
| 3-9365159-G-A | not specified | Likely benign (Apr 25, 2022) | ||
| 3-9365183-A-G | not specified | Uncertain significance (Oct 13, 2023) | ||
| 3-9365193-C-T | not specified | Uncertain significance (Jan 04, 2022) | ||
| 3-9365210-T-C | not specified | Uncertain significance (May 15, 2023) | ||
| 3-9365247-T-A | not specified | Uncertain significance (Jan 07, 2022) | ||
| 3-9366911-C-A | not specified | Uncertain significance (Aug 12, 2021) | ||
| 3-9366942-T-C | not specified | Uncertain significance (Jul 19, 2022) | ||
| 3-9366947-G-A | not specified | Uncertain significance (Dec 18, 2023) | ||
| 3-9366953-G-C | not specified | Uncertain significance (May 04, 2022) | ||
| 3-9366974-A-G | not specified | Uncertain significance (Jun 16, 2024) | ||
| 3-9371165-C-T | not specified | Uncertain significance (Oct 12, 2021) | ||
| 3-9371274-C-T | not specified | Uncertain significance (Oct 17, 2023) | ||
| 3-9371314-G-C | not specified | Uncertain significance (Jan 10, 2022) | ||
| 3-9371316-A-T | not specified | Uncertain significance (Nov 03, 2023) | ||
| 3-9371319-T-G | not specified | Uncertain significance (Dec 11, 2023) | ||
| 3-9371339-G-T | not specified | Uncertain significance (Feb 13, 2024) | ||
| 3-9371348-T-C | not specified | Uncertain significance (Feb 22, 2023) | ||
| 3-9371378-A-G | not specified | Uncertain significance (Jun 22, 2023) | ||
| 3-9371393-C-T | not specified | Uncertain significance (Apr 23, 2024) | ||
| 3-9371396-C-G | not specified | Likely benign (Aug 02, 2023) | ||
| 3-9371409-T-G | not specified | Uncertain significance (Feb 05, 2024) | ||
| 3-9371429-G-C | not specified | Uncertain significance (Mar 24, 2023) | ||
| 3-9371493-A-G | not specified | Uncertain significance (May 08, 2024) | ||
| 3-9371528-G-C | not specified | Uncertain significance (Feb 28, 2023) | ||
| 3-9371532-T-C | not specified | Uncertain significance (Nov 18, 2023) |
GnomAD
Source:
dbNSFP
Source:
Mouse Genome Informatics
- Gene name
- Gt(ROSA)26Sor
- Phenotype
- embryo phenotype; behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan); liver/biliary system phenotype; respiratory system phenotype; cardiovascular system phenotype (the observable morphological and physiological characteristics of the mammalian heart, blood vessels, or circulatory system that are manifested through development and lifespan); hematopoietic system phenotype; normal phenotype; mortality/aging (the observable characteristics related to the ability of a mammalian organism to live and age that are manifested throughout development and life span); reproductive system phenotype; pigmentation phenotype; neoplasm; digestive/alimentary phenotype; limbs/digits/tail phenotype; hearing/vestibular/ear phenotype; nervous system phenotype (the observable morphological and physiological characteristics of the extensive, intricate network of electochemical structures in the body that is comprised of the brain, spinal cord, nerves, ganglia and parts of the receptor organs that are manifested through development and lifespan); vision/eye phenotype; immune system phenotype; renal/urinary system phenotype; skeleton phenotype; growth/size/body region phenotype; integument phenotype (the observable morphological and physiological characteristics of the skin and its associated structures, such as the hair, nails, sweat glands, sebaceous glands and other secretory glands that are manifested through development and lifespan); taste/olfaction phenotype; adipose tissue phenotype (the observable morphological and physiological characteristics of mammalian fat tissue that are manifested through development and lifespan); endocrine/exocrine gland phenotype; muscle phenotype; craniofacial phenotype; homeostasis/metabolism phenotype; cellular phenotype;