ZNF263

zinc finger protein 263, the group of SCAN domain containing|Zinc fingers C2H2-type

Basic information

Region (hg38): 16:3283283-3301401

Links

ENSG00000006194 ∙ NCBI:10127 ∙ OMIM:604191 ∙ HGNC:13056 ∙ Uniprot:O14978 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF263 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF263 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			54	3		57
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	54	3	0

Variants in ZNF263

This is a list of pathogenic ClinVar variants found in the ZNF263 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
16-3283826-C-T		not specified	Uncertain significance (Dec 05, 2023)
16-3283828-G-A		not specified	Uncertain significance (Jul 17, 2024)
16-3283829-G-A		not specified	Uncertain significance (Aug 10, 2021)
16-3283832-C-T		not specified	Uncertain significance (Oct 25, 2023)
16-3283843-G-A		not specified	Uncertain significance (Oct 07, 2024)
16-3283878-G-C		not specified	Uncertain significance (May 20, 2024)
16-3283886-C-T		not specified	Uncertain significance (Dec 07, 2023)
16-3283913-A-G		not specified	Uncertain significance (Feb 07, 2025)
16-3283914-C-A		not specified	Uncertain significance (Jun 17, 2024)
16-3283937-C-T		not specified	Uncertain significance (Nov 20, 2024)
16-3284090-C-T		not specified	Uncertain significance (Sep 12, 2023)
16-3284159-C-T		not specified	Uncertain significance (Mar 27, 2023)
16-3284170-G-A		not specified	Uncertain significance (Aug 17, 2021)
16-3284188-G-C		not specified	Uncertain significance (Feb 26, 2024)
16-3285071-G-A		not specified	Uncertain significance (Dec 06, 2021)
16-3285074-C-T		not specified	Uncertain significance (Jun 29, 2022)
16-3285095-G-A		not specified	Uncertain significance (Nov 09, 2021)
16-3285101-C-A		not specified	Uncertain significance (Jan 02, 2025)
16-3285113-G-A		not specified	Uncertain significance (Nov 29, 2023)
16-3285152-A-C		not specified	Uncertain significance (Apr 17, 2024)
16-3285165-G-A		not specified	Uncertain significance (Jun 27, 2023)
16-3285693-C-T		not specified	Uncertain significance (Apr 25, 2022)
16-3285749-C-T		not specified	Uncertain significance (Sep 20, 2023)
16-3286030-A-G		not specified	Uncertain significance (Dec 07, 2021)
16-3286050-A-G		not specified	Uncertain significance (Nov 14, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF263	protein_coding	protein_coding	ENST00000219069	6	37659

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
5.46e-10	0.838	125701	0	47	125748	0.000187

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.0322	392	390	1.00	0.0000205	4477
Missense in Polyphen		131	160.7	0.81519		1826
Synonymous	-0.332	158	153	1.03	0.00000813	1339
Loss of Function	1.69	19	28.8	0.660	0.00000157	336

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000246	0.000246
Ashkenazi Jewish	0.000298	0.000298
East Asian	0.000218	0.000217
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.000143	0.000141
Middle Eastern	0.000218	0.000217
South Asian	0.000626	0.000555
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Might play an important role in basic cellular processes as a transcriptional repressor.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.120

Intolerance Scores

• loftool: 0.730
• rvis_EVS: -0.47
• rvis_percentile_EVS: 23.51

Haploinsufficiency Scores

• pHI: 0.496
• hipred: N
• hipred_score: 0.304
• ghis: 0.524

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 1.00

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp263

Gene ontology

• Biological process: negative regulation of transcription by RNA polymerase II;regulation of transcription, DNA-templated;negative regulation of transcription, DNA-templated
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA-binding transcription repressor activity, RNA polymerase II-specific;DNA-binding transcription factor activity;protein binding;sequence-specific DNA binding;metal ion binding