ZNF35

zinc finger protein 35, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 3:44648732-44660791

Links

ENSG00000169981 ∙ NCBI:7584 ∙ OMIM:194533 ∙ HGNC:13099 ∙ Uniprot:P13682 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF35 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF35 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			36			36
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	36	0	0

Variants in ZNF35

This is a list of pathogenic ClinVar variants found in the ZNF35 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
3-44651188-G-A		not specified	Uncertain significance (Jun 06, 2022)
3-44651200-G-A		not specified	Uncertain significance (Oct 01, 2024)
3-44651240-G-A		not specified	Uncertain significance (Jan 08, 2024)
3-44652564-A-G		not specified	Uncertain significance (Feb 24, 2025)
3-44652578-A-G		not specified	Uncertain significance (Jun 05, 2024)
3-44652600-C-T		not specified	Uncertain significance (Jan 16, 2025)
3-44652607-G-T		not specified	Uncertain significance (Feb 12, 2025)
3-44652672-T-C		not specified	Uncertain significance (Feb 23, 2023)
3-44658701-G-A		not specified	Uncertain significance (Nov 11, 2024)
3-44658748-T-C		not specified	Uncertain significance (Sep 20, 2023)
3-44658776-T-C		not specified	Uncertain significance (Nov 11, 2024)
3-44658819-A-C		not specified	Uncertain significance (Jul 25, 2023)
3-44658842-A-T		not specified	Uncertain significance (Feb 23, 2023)
3-44658854-G-C		not specified	Uncertain significance (Nov 20, 2024)
3-44658868-A-G		not specified	Uncertain significance (Nov 03, 2023)
3-44658922-A-G		not specified	Uncertain significance (Apr 12, 2024)
3-44658928-A-G		not specified	Uncertain significance (Jul 13, 2021)
3-44658941-A-C		not specified	Uncertain significance (May 10, 2024)
3-44658968-A-C		not specified	Uncertain significance (Apr 25, 2023)
3-44658971-A-G		not specified	Uncertain significance (Jun 18, 2021)
3-44659039-G-A		not specified	Uncertain significance (Mar 01, 2023)
3-44659076-T-C		not specified	Uncertain significance (Nov 07, 2023)
3-44659088-G-A		not specified	Uncertain significance (Aug 29, 2022)
3-44659093-C-T		not specified	Uncertain significance (Aug 11, 2024)
3-44659108-C-T		not specified	Uncertain significance (Jan 09, 2025)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF35	protein_coding	protein_coding	ENST00000396056	3	12065

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0420	0.957	125705	0	42	125747	0.000167

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.36	212	275	0.770	0.0000132	3499
Missense in Polyphen		58	100.92	0.5747		1308
Synonymous	-0.612	109	101	1.08	0.00000531	952
Loss of Function	2.85	6	19.6	0.305	9.94e-7	266

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000501	0.000490
Ashkenazi Jewish	0.00	0.00
East Asian	0.000272	0.000272
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.000115	0.000114
Middle Eastern	0.000272	0.000272
South Asian	0.000459	0.000457
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation. Involved in cell differentiation and/or proliferation.

Recessive Scores

• pRec: 0.0987

Intolerance Scores

• loftool: 0.693
• rvis_EVS: -0.49
• rvis_percentile_EVS: 22.36

Haploinsufficiency Scores

• pHI: 0.586
• hipred: N
• hipred_score: 0.304
• ghis: 0.587

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.992

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	High
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp105
• Phenotype: reproductive system phenotype

Gene ontology

• Biological process: regulation of transcription, DNA-templated;regulation of transcription by RNA polymerase II;spermatogenesis;cellular response to retinoic acid
• Cellular component: cell;nucleus;perinuclear region of cytoplasm
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;DNA-binding transcription factor activity;sequence-specific DNA binding;metal ion binding