15-89477872-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_016321.3(RHCG):c.940G>A(p.Gly314Ser) variant causes a missense change involving the alteration of a conserved nucleotide. The variant allele was found at a frequency of 0.000339 in 1,614,046 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_016321.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
RHCG | NM_016321.3 | c.940G>A | p.Gly314Ser | missense_variant | Exon 6 of 11 | ENST00000268122.9 | NP_057405.1 | |
RHCG | NM_001321041.2 | c.940G>A | p.Gly314Ser | missense_variant | Exon 6 of 11 | NP_001307970.1 | ||
RHCG | XM_047432651.1 | c.940G>A | p.Gly314Ser | missense_variant | Exon 6 of 11 | XP_047288607.1 | ||
RHCG | NR_110261.2 | n.979G>A | non_coding_transcript_exon_variant | Exon 6 of 11 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000322 AC: 49AN: 152112Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.000183 AC: 46AN: 251138Hom.: 0 AF XY: 0.000103 AC XY: 14AN XY: 135816
GnomAD4 exome AF: 0.000341 AC: 498AN: 1461816Hom.: 0 Cov.: 32 AF XY: 0.000320 AC XY: 233AN XY: 727216
GnomAD4 genome AF: 0.000322 AC: 49AN: 152230Hom.: 0 Cov.: 32 AF XY: 0.000255 AC XY: 19AN XY: 74438
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.940G>A (p.G314S) alteration is located in exon 6 (coding exon 6) of the RHCG gene. This alteration results from a G to A substitution at nucleotide position 940, causing the glycine (G) at amino acid position 314 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at