4-101701686-T-C
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The XR_001741778.1(LOC107986297):n.193+11316T>C variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.445 in 151,954 control chromosomes in the GnomAD database, including 15,527 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
XR_001741778.1 intron, non_coding_transcript
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
LOC107986297 | XR_001741778.1 | n.193+11316T>C | intron_variant, non_coding_transcript_variant | ||||
LOC107986297 | XR_001741779.1 | n.193+11316T>C | intron_variant, non_coding_transcript_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
BANK1 | ENST00000504592.5 | c.-45-19678T>C | intron_variant | 2 |
Frequencies
GnomAD3 genomes AF: 0.446 AC: 67661AN: 151836Hom.: 15521 Cov.: 32
GnomAD4 genome AF: 0.445 AC: 67685AN: 151954Hom.: 15527 Cov.: 32 AF XY: 0.435 AC XY: 32336AN XY: 74262
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at