5-68226877-G-T
Variant summary
Our verdict is Uncertain significance. Variant got 4 ACMG points: 4P and 0B. PM2PP2PP3
The NM_181523.3(PIK3R1):c.202G>T(p.Asp68Tyr) variant causes a missense change involving the alteration of a conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a pathogenic outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. D68H) has been classified as Uncertain significance.
Frequency
Consequence
NM_181523.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 4 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
PIK3R1 | NM_181523.3 | c.202G>T | p.Asp68Tyr | missense_variant | 2/16 | ENST00000521381.6 | |
PIK3R1 | XM_005248542.4 | c.202G>T | p.Asp68Tyr | missense_variant | 2/16 | ||
PIK3R1 | XM_017009585.3 | c.202G>T | p.Asp68Tyr | missense_variant | 2/16 | ||
PIK3R1 | XM_047417315.1 | c.202G>T | p.Asp68Tyr | missense_variant | 2/16 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
PIK3R1 | ENST00000521381.6 | c.202G>T | p.Asp68Tyr | missense_variant | 2/16 | 1 | NM_181523.3 | P1 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome Cov.: 31
GnomAD4 genome Cov.: 32
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at