NM_003289.4:c.564-19dupC
Variant summary
Our verdict is Benign. Variant got -16 ACMG points: 0P and 16B. BP6_Very_StrongBA1
The NM_003289.4(TPM2):c.564-19dupC variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.619 in 1,596,748 control chromosomes in the GnomAD database, including 303,763 homozygotes. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_003289.4 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -16 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.624 AC: 93834AN: 150344Hom.: 29415 Cov.: 0
GnomAD4 exome AF: 0.618 AC: 893752AN: 1446288Hom.: 274317 Cov.: 36 AF XY: 0.620 AC XY: 446208AN XY: 719346
GnomAD4 genome AF: 0.624 AC: 93917AN: 150460Hom.: 29446 Cov.: 0 AF XY: 0.629 AC XY: 46210AN XY: 73418
ClinVar
Submissions by phenotype
not specified Benign:3
This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease. -
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Arthrogryposis, distal, type 1A Benign:1
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at