NM_172217.5:c.*643T>C
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBA1
The NM_172217.5(IL16):c.*643T>C variant causes a 3 prime UTR change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.322 in 152,618 control chromosomes in the GnomAD database, including 8,026 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_172217.5 3_prime_UTR
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.322 AC: 48992AN: 151996Hom.: 7984 Cov.: 33
GnomAD4 exome AF: 0.329 AC: 165AN: 502Hom.: 31 Cov.: 0 AF XY: 0.317 AC XY: 90AN XY: 284
GnomAD4 genome AF: 0.322 AC: 49045AN: 152116Hom.: 7995 Cov.: 33 AF XY: 0.318 AC XY: 23630AN XY: 74376
ClinVar
Submissions by phenotype
not provided Benign:2
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This variant is associated with the following publications: (PMID: 24465869) -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at