chr13-33488647-C-T
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000686875.1(ENSG00000230490):n.278+35591G>A variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.259 in 152,102 control chromosomes in the GnomAD database, including 6,289 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
STARD13 | NM_001243476.3 | c.30+35591G>A | intron_variant | ||||
STARD13 | XM_017020835.3 | c.30+35591G>A | intron_variant | ||||
STARD13 | XM_024449429.2 | c.30+35591G>A | intron_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ENST00000686875.1 | n.278+35591G>A | intron_variant, non_coding_transcript_variant | |||||||
ENST00000454681.2 | n.226+35591G>A | intron_variant, non_coding_transcript_variant | 5 |
Frequencies
GnomAD3 genomes ? AF: 0.260 AC: 39456AN: 151984Hom.: 6289 Cov.: 32
GnomAD4 genome ? AF: 0.259 AC: 39451AN: 152102Hom.: 6289 Cov.: 32 AF XY: 0.257 AC XY: 19095AN XY: 74370
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at