chr4-148634967-C-A
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The ENST00000661928.1(ENSG00000287292):n.222+90383C>A variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000461 in 151,818 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
LOC107986195 | XR_001741441.2 | n.3661+90383C>A | intron_variant, non_coding_transcript_variant | ||||
LOC105377483 | XR_007058326.1 | n.319-16166G>T | intron_variant, non_coding_transcript_variant | ||||
LOC105377483 | XR_939336.4 | n.319-16099G>T | intron_variant, non_coding_transcript_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ENST00000661928.1 | n.222+90383C>A | intron_variant, non_coding_transcript_variant |
Frequencies
GnomAD3 genomes AF: 0.0000461 AC: 7AN: 151818Hom.: 0 Cov.: 32
GnomAD4 genome AF: 0.0000461 AC: 7AN: 151818Hom.: 0 Cov.: 32 AF XY: 0.0000540 AC XY: 4AN XY: 74124
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at