chr9-134754286-T-G
Variant summary
Our verdict is Uncertain significance. Variant got 3 ACMG points: 3P and 0B. PM2PP2
The NM_000093.5(COL5A1):c.1787T>G(p.Val596Gly) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. V596A) has been classified as Likely benign.
Frequency
Consequence
NM_000093.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 3 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
COL5A1 | NM_000093.5 | c.1787T>G | p.Val596Gly | missense_variant | 16/66 | ENST00000371817.8 | |
COL5A1 | NM_001278074.1 | c.1787T>G | p.Val596Gly | missense_variant | 16/66 | ||
COL5A1 | XM_017014266.3 | c.1787T>G | p.Val596Gly | missense_variant | 16/65 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
COL5A1 | ENST00000371817.8 | c.1787T>G | p.Val596Gly | missense_variant | 16/66 | 1 | NM_000093.5 | P4 | |
COL5A1 | ENST00000371820.4 | c.1787T>G | p.Val596Gly | missense_variant | 16/66 | 2 | A2 |
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD4 exome Cov.: 33
GnomAD4 genome Cov.: 33
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at