rs17773233
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000555776.1(ENSG00000259097):n.122-35797C>A variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.159 in 152,074 control chromosomes in the GnomAD database, including 2,288 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
LOC105370655 | XR_001750876.2 | n.96-35797C>A | intron_variant, non_coding_transcript_variant | ||||
LOC105370653 | XR_944188.3 | n.481-202G>T | intron_variant, non_coding_transcript_variant | ||||
LOC105370653 | XR_944189.3 | n.478-202G>T | intron_variant, non_coding_transcript_variant | ||||
LOC105370653 | XR_944190.3 | n.339-202G>T | intron_variant, non_coding_transcript_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ENST00000555776.1 | n.122-35797C>A | intron_variant, non_coding_transcript_variant | 4 |
Frequencies
GnomAD3 genomes AF: 0.159 AC: 24151AN: 151954Hom.: 2285 Cov.: 31
GnomAD4 genome AF: 0.159 AC: 24164AN: 152074Hom.: 2288 Cov.: 31 AF XY: 0.156 AC XY: 11572AN XY: 74312
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at