CXXC4-AS1

CXXC4 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 4:104490803-104734546

Links

ENSG00000245384 ∙ NCBI:101929468 ∙ ∙ HGNC:41054 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the CXXC4-AS1 gene.

• not provided (7 variants)
• Inborn genetic diseases (2 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the CXXC4-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			2	7		9
Total	0	0	2	7	0

Variants in CXXC4-AS1

This is a list of pathogenic ClinVar variants found in the CXXC4-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
4-104490962-G-A		not specified	Uncertain significance (Dec 21, 2023)
4-104491171-C-G		not specified	Uncertain significance (May 24, 2023)
4-104491244-C-G		not specified	Uncertain significance (Aug 12, 2021)
4-104491250-G-A		not specified	Uncertain significance (Apr 20, 2024)
4-104491253-A-G		not specified	Uncertain significance (Apr 04, 2024)
4-104491410-A-C			Likely benign (Dec 01, 2022)
4-104491413-A-C			Likely benign (Feb 01, 2024)
4-104491419-G-C			Likely benign (Nov 01, 2022)
4-104491428-T-C			Likely benign (Oct 01, 2024)
4-104491434-G-T			Likely benign (Oct 01, 2024)
4-104491452-A-C			Likely benign (Feb 01, 2024)
4-104491458-C-G			Likely benign (Oct 01, 2023)
4-104491464-G-C			Likely benign (Jan 01, 2023)
4-104491467-G-C			Likely benign (Jan 01, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP