GABRR3
Basic information
Region (hg38): 3:97985101-98035315
Links
Phenotypes
GenCC
Source:
ClinVar
This is a list of variants' phenotypes submitted to
- Inborn genetic diseases (21 variants)
Variants pathogenicity by type
Statistics on ClinVar variants can assist in determining whether a specific variant type in the GABRR3 gene is commonly pathogenic or not.
In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.
Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.
Variant type | Pathogenic | Likely pathogenic | VUS | Likely benign | Benign | Sum |
---|---|---|---|---|---|---|
synonymous | 0 | |||||
missense | 19 | 21 | ||||
nonsense | 0 | |||||
start loss | 0 | |||||
frameshift | 0 | |||||
inframe indel | 0 | |||||
splice donor/acceptor (+/-2bp) | 0 | |||||
splice region ? | 0 | |||||
non coding ? | 0 | |||||
Total | 0 | 0 | 19 | 2 | 0 |
Variants in GABRR3
This is a list of pathogenic ClinVar variants found in the GABRR3 region.
You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.
Position | Type | Phenotype | Significance | ClinVar |
---|---|---|---|---|
3-97986711-T-C | not specified | Uncertain significance (Dec 07, 2023) | ||
3-97986723-T-C | not specified | Uncertain significance (Dec 20, 2023) | ||
3-97986783-A-T | not specified | Uncertain significance (Dec 31, 2023) | ||
3-97986976-T-C | not specified | Likely benign (Nov 13, 2023) | ||
3-97992952-C-A | not specified | Uncertain significance (Apr 25, 2023) | ||
3-97993001-C-T | not specified | Uncertain significance (Apr 12, 2022) | ||
3-97993009-G-C | not specified | Likely benign (Feb 07, 2023) | ||
3-98001742-G-T | not specified | Uncertain significance (Feb 21, 2024) | ||
3-98001753-G-A | not specified | Uncertain significance (Oct 27, 2021) | ||
3-98007782-C-A | not specified | Uncertain significance (Jan 03, 2022) | ||
3-98007796-G-T | not specified | Uncertain significance (May 09, 2023) | ||
3-98007832-A-G | not specified | Uncertain significance (Oct 27, 2022) | ||
3-98008964-A-T | not specified | Uncertain significance (Jul 05, 2023) | ||
3-98008985-G-A | not specified | Uncertain significance (Jun 21, 2021) | ||
3-98009033-G-A | not specified | Uncertain significance (Jan 04, 2024) | ||
3-98012378-C-T | not specified | Uncertain significance (Jan 03, 2024) | ||
3-98012446-T-A | not specified | Uncertain significance (Mar 28, 2023) | ||
3-98012447-C-A | not specified | Uncertain significance (Dec 27, 2023) | ||
3-98012447-C-T | not specified | Uncertain significance (Nov 08, 2022) | ||
3-98012528-C-A | not specified | Uncertain significance (Apr 05, 2023) | ||
3-98017660-T-C | not specified | Uncertain significance (Oct 26, 2021) | ||
3-98017713-A-G | not specified | Uncertain significance (Nov 09, 2023) | ||
3-98025583-C-T | not specified | Uncertain significance (Jan 24, 2024) | ||
3-98025594-C-T | not specified | Uncertain significance (Aug 17, 2021) | ||
3-98025605-A-G | not specified | Uncertain significance (Aug 15, 2023) |
GnomAD
Source:
dbNSFP
Source:
- Function
- FUNCTION: GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel. {ECO:0000250}.;
- Pathway
- Retrograde endocannabinoid signaling - Homo sapiens (human);GABAergic synapse - Homo sapiens (human);Nicotine addiction - Homo sapiens (human);Neuroactive ligand-receptor interaction - Homo sapiens (human);Morphine addiction - Homo sapiens (human);Prader-Willi and Angelman Syndrome;Neuronal System;GABA A (rho) receptor activation;GABA receptor activation;Neurotransmitter receptors and postsynaptic signal transmission;Transmission across Chemical Synapses
(Consensus)
Intolerance Scores
- loftool
- rvis_EVS
- -0.02
- rvis_percentile_EVS
- 52.09
Essentials
- essential_gene_CRISPR
- essential_gene_CRISPR2
- N
- essential_gene_gene_trap
- gene_indispensability_pred
- E
- gene_indispensability_score
- 0.508
Mouse Genome Informatics
- Gene name
- Gabrr3
- Phenotype
Gene ontology
- Biological process
- signal transduction;gamma-aminobutyric acid signaling pathway;chemical synaptic transmission;ion transmembrane transport;regulation of membrane potential;nervous system process;chloride transmembrane transport
- Cellular component
- cellular_component;plasma membrane;integral component of plasma membrane;cell junction;chloride channel complex;neuron projection;synapse;postsynaptic membrane;GABA-A receptor complex
- Molecular function
- GABA-A receptor activity;extracellular ligand-gated ion channel activity;chloride channel activity;protein domain specific binding