H3C2

H3 clustered histone 2, the group of H3 histones

Basic information

Region (hg38): 6:26031588-26032099

Previous symbols: [ "H3FL", "HIST1H3B" ]

Links

ENSG00000286522 ∙ NCBI:8358 ∙ OMIM:602819 ∙ HGNC:4776 ∙ Uniprot:P68431 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the H3C2 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the H3C2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			3			3
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	3	0	0

Variants in H3C2

This is a list of pathogenic ClinVar variants found in the H3C2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-26031640-G-A		Squamous cell lung carcinoma	Uncertain significance (May 05, 2020)
6-26031734-G-A		Squamous cell lung carcinoma	Likely benign (May 05, 2020)
6-26031753-C-A		not specified	Uncertain significance (May 28, 2024)
6-26031790-T-C		not specified	Uncertain significance (Apr 11, 2023)
6-26031801-C-T		not specified	Uncertain significance (Jun 04, 2024)
6-26031861-G-A		not specified	Uncertain significance (Nov 09, 2023)
6-26031897-T-C		not specified	Uncertain significance (Jul 25, 2023)
6-26031951-T-A		Doxorubicin response	drug response (-)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP