IGHV3-16

immunoglobulin heavy variable 3-16 (non-functional), the group of Immunoglobulin heavy locus at 14q32.33

Basic information

Region (hg38): 14:106165205-106165730

Links

ENSG00000211944

∙ NCBI:28447 ∙ ∙ HGNC:5583 ∙ Uniprot:A0A0C4DH30 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the IGHV3-16 gene.

not provided (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the IGHV3-16 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense				1 clinvar		1
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	1	0

Variants in IGHV3-16

This is a list of pathogenic ClinVar variants found in the IGHV3-16 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
14-106165243-G-A			Likely benign (Dec 01, 2022)	2644930

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

Gene ontology

Biological process: phagocytosis, recognition;phagocytosis, engulfment;complement activation, classical pathway;defense response to bacterium;innate immune response;B cell receptor signaling pathway;positive regulation of B cell activation
Cellular component: external side of plasma membrane;immunoglobulin complex, circulating
Molecular function: antigen binding;immunoglobulin receptor binding