LINC01504

long intergenic non-protein coding RNA 1504, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 9:72305219-72364194

Links

ENSG00000225434 ∙ NCBI:100507540 ∙ ∙ HGNC:51185 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC01504 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC01504 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			1			1
Total	0	0	1	0	0

Variants in LINC01504

This is a list of pathogenic ClinVar variants found in the LINC01504 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
9-72355992-C-A		not specified	Uncertain significance (Apr 12, 2022)
9-72357007-A-T		not specified	Uncertain significance (Jan 21, 2025)
9-72359441-G-A		not specified	Uncertain significance (Jun 23, 2023)
9-72359480-G-A		not specified	Uncertain significance (Sep 15, 2021)
9-72359516-A-G		not specified	Uncertain significance (Jan 21, 2025)
9-72360123-A-G		not specified	Uncertain significance (Dec 31, 2024)
9-72360173-T-A		not specified	Uncertain significance (Sep 09, 2024)
9-72360643-T-C		not specified	Uncertain significance (May 30, 2024)
9-72360685-C-G		not specified	Uncertain significance (Aug 21, 2024)
9-72360692-C-G		not specified	Uncertain significance (Feb 12, 2025)
9-72360795-T-C			Benign (Jul 01, 2019)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP