LINC02244

long intergenic non-protein coding RNA 2244, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 15:99361257-99403839

Links

ENSG00000259590

∙ NCBI:105371018 ∙ ∙ HGNC:53929 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02244 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02244 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC02244

This is a list of pathogenic ClinVar variants found in the LINC02244 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Phenotype	Significance	ClinVar
15-99361400-G-A	not specified	Uncertain significance (Dec 17, 2023)	3120515
15-99361427-A-G	not specified	Uncertain significance (Dec 08, 2023)	2344470
15-99361448-G-A	not specified	Uncertain significance (Jul 21, 2021)	2239181
15-99361472-A-G	not specified	Uncertain significance (Aug 02, 2022)	2382715
15-99363159-C-T	not specified	Uncertain significance (Apr 27, 2022)	2396748
15-99363237-G-A	not specified	Uncertain significance (Jun 29, 2023)	2608203
15-99363246-A-G	not specified	Uncertain significance (Jun 02, 2023)	2515642
15-99386037-A-G	not specified	Uncertain significance (Mar 23, 2023)	2562340
15-99386040-G-C	not specified	Uncertain significance (Jul 20, 2021)	2354545

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP