OR10A6

olfactory receptor family 10 subfamily A member 6 (gene/pseudogene), the group of Olfactory receptors, family 10

Basic information

Region (hg38): 11:7924592-7931268

Links

ENSG00000279000 ∙ NCBI:390093 ∙ ∙ HGNC:15132 ∙ Uniprot:Q8NH74 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR10A6 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR10A6 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			25	2		27
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	25	2	0

Variants in OR10A6

This is a list of pathogenic ClinVar variants found in the OR10A6 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-7927723-T-C		not specified	Uncertain significance (Jan 10, 2023)
11-7927765-C-G		not specified	Uncertain significance (Sep 27, 2021)
11-7927779-C-G		not specified	Uncertain significance (Jun 01, 2023)
11-7927779-C-T		not specified	Uncertain significance (Oct 22, 2021)
11-7927789-A-T		not specified	Uncertain significance (Jan 24, 2024)
11-7927797-A-G		not specified	Uncertain significance (Apr 07, 2022)
11-7927798-T-C		not specified	Uncertain significance (May 10, 2024)
11-7927860-G-A		not specified	Uncertain significance (Jun 05, 2024)
11-7927932-T-G		not specified	Uncertain significance (May 18, 2022)
11-7927947-G-A		not specified	Uncertain significance (Sep 26, 2022)
11-7927960-G-T		not specified	Uncertain significance (May 13, 2024)
11-7927980-A-G		not specified	Uncertain significance (May 20, 2024)
11-7927983-T-A		not specified	Uncertain significance (Apr 01, 2024)
11-7927990-T-C		not specified	Uncertain significance (Oct 29, 2021)
11-7928022-A-G		not specified	Uncertain significance (Jan 09, 2024)
11-7928037-A-G		not specified	Uncertain significance (Dec 08, 2023)
11-7928055-G-A		not specified	Uncertain significance (Sep 26, 2023)
11-7928058-C-T		not specified	Uncertain significance (Jun 02, 2024)
11-7928088-G-A		not specified	Uncertain significance (Feb 23, 2023)
11-7928119-G-T		not specified	Uncertain significance (Mar 02, 2023)
11-7928156-A-C		not specified	Uncertain significance (Jan 05, 2022)
11-7928158-A-G		not specified	Uncertain significance (Mar 13, 2023)
11-7928179-A-G		not specified	Uncertain significance (Oct 25, 2023)
11-7928209-C-G		not specified	Uncertain significance (Nov 22, 2022)
11-7928275-G-A		not specified	Uncertain significance (Feb 15, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.0915

Intolerance Scores

• loftool: 0.900
• rvis_EVS: 0.91
• rvis_percentile_EVS: 89.5

Haploinsufficiency Scores

• pHI: 0.0997
• hipred: N
• hipred_score: 0.112

Essentials

• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.118

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	High	High	High
Primary Immunodeficiency	High	High	High
Cancer	High	High	High

Mouse Genome Informatics

• Gene name: Olfr519

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity