OR11L1

olfactory receptor family 11 subfamily L member 1, the group of Olfactory receptors, family 11

Basic information

Region (hg38): 1:247840927-247841896

Links

ENSG00000197591 ∙ NCBI:391189 ∙ ∙ HGNC:14998 ∙ Uniprot:Q8NGX0 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR11L1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR11L1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			17	1		18
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	17	1	0

Variants in OR11L1

This is a list of pathogenic ClinVar variants found in the OR11L1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-247840938-A-G		not specified	Uncertain significance (Feb 17, 2022)
1-247840960-A-G		not specified	Uncertain significance (Oct 20, 2023)
1-247840971-C-T		not specified	Uncertain significance (Sep 20, 2023)
1-247841038-G-A		not specified	Uncertain significance (Mar 19, 2024)
1-247841073-G-C		not specified	Uncertain significance (Jan 26, 2022)
1-247841161-C-T		not specified	Uncertain significance (Jun 01, 2023)
1-247841178-G-T		not specified	Uncertain significance (Jan 09, 2024)
1-247841263-A-G		not specified	Uncertain significance (Jul 25, 2023)
1-247841281-C-T		not specified	Uncertain significance (Jan 04, 2022)
1-247841339-C-G		not specified	Uncertain significance (Mar 01, 2024)
1-247841344-T-G		not specified	Uncertain significance (Mar 27, 2023)
1-247841372-G-T		not specified	Uncertain significance (Oct 27, 2022)
1-247841484-C-T		not specified	Uncertain significance (Jan 02, 2024)
1-247841505-C-T		not specified	Likely benign (Oct 20, 2021)
1-247841566-C-T		not specified	Uncertain significance (Apr 21, 2022)
1-247841584-C-T		not specified	Uncertain significance (Feb 14, 2023)
1-247841628-T-G		not specified	Uncertain significance (Jul 14, 2021)
1-247841736-C-A		not specified	Uncertain significance (Aug 23, 2021)
1-247841755-C-T		not specified	Uncertain significance (Sep 22, 2023)
1-247841758-T-C		not specified	Uncertain significance (Jun 10, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
OR11L1	protein_coding	protein_coding	ENST00000355784	1	1056

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0501	0.868	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.348	190	177	1.07	0.00000937	2090
Missense in Polyphen		65	60.617	1.0723		760
Synonymous	-0.0132	74	73.9	1.00	0.00000397	681
Loss of Function	1.44	3	7.15	0.419	3.92e-7	71

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Olfactory receptor activity;Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Intolerance Scores

• loftool: 0.615
• rvis_EVS: 1.02
• rvis_percentile_EVS: 90.98

Haploinsufficiency Scores

• pHI: 0.0713
• hipred: N
• hipred_score: 0.170

Essentials

• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.132

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Olfr323

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;sensory perception of smell;biological_process;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane;extracellular exosome
• Molecular function: molecular_function;G protein-coupled receptor activity;olfactory receptor activity;odorant binding