OR13C8

olfactory receptor family 13 subfamily C member 8, the group of Olfactory receptors, family 13

Basic information

Region (hg38): 9:104569168-104570130

Links

ENSG00000186943 ∙ NCBI:138802 ∙ ∙ HGNC:15103 ∙ Uniprot:Q8NGS7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR13C8 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR13C8 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			19			19
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	19	0	0

Variants in OR13C8

This is a list of pathogenic ClinVar variants found in the OR13C8 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
9-104569249-T-G		not specified	Uncertain significance (May 17, 2023)
9-104569252-G-C		not specified	Uncertain significance (Jul 08, 2022)
9-104569337-C-A		not specified	Uncertain significance (May 26, 2024)
9-104569337-C-T		not specified	Uncertain significance (Dec 14, 2023)
9-104569412-T-C		not specified	Uncertain significance (Aug 02, 2021)
9-104569454-G-T		not specified	Uncertain significance (Dec 11, 2023)
9-104569531-C-T		not specified	Uncertain significance (Nov 09, 2021)
9-104569574-T-C		not specified	Uncertain significance (Nov 09, 2023)
9-104569616-T-A		not specified	Uncertain significance (Dec 21, 2023)
9-104569688-T-G		not specified	Uncertain significance (May 03, 2023)
9-104569810-T-C		not specified	Uncertain significance (Aug 12, 2021)
9-104569813-A-C		not specified	Uncertain significance (Aug 17, 2022)
9-104569817-C-G		not specified	Uncertain significance (Jan 17, 2024)
9-104569882-T-G		not specified	Uncertain significance (May 17, 2023)
9-104569994-T-C		not specified	Uncertain significance (Jan 22, 2024)
9-104570053-T-C		not specified	Uncertain significance (Nov 30, 2022)
9-104570054-A-G		not specified	Uncertain significance (Nov 18, 2022)
9-104570069-A-C		not specified	Uncertain significance (Nov 14, 2023)
9-104570086-G-T		not specified	Uncertain significance (Dec 15, 2022)
9-104570111-A-G		not specified	Uncertain significance (Jul 25, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
OR13C8	protein_coding	protein_coding	ENST00000335040	1	963

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0000558	0.275	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.269	160	170	0.942	0.00000850	2098
Missense in Polyphen		57	60.431	0.94323		779
Synonymous	-1.45	82	66.9	1.23	0.00000379	669
Loss of Function	-0.295	6	5.27	1.14	2.24e-7	84

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Olfactory receptor activity;Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Intolerance Scores

• loftool: 0.536
• rvis_EVS: 0.49
• rvis_percentile_EVS: 79.38

Haploinsufficiency Scores

• pHI: 0.250
• hipred: N
• hipred_score: 0.144

Essentials

• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0617

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Olfr272

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity