OR4F4

olfactory receptor family 4 subfamily F member 4, the group of Olfactory receptors, family 4

Basic information

Region (hg38): 15:101922041-101923113

Links

ENSG00000177693 ∙ NCBI:26682 ∙ ∙ HGNC:8301 ∙ Uniprot:Q96R69 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR4F4 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR4F4 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			13	1		14
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	13	1	0

Variants in OR4F4

This is a list of pathogenic ClinVar variants found in the OR4F4 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
15-101922183-G-A		not specified	Uncertain significance (Dec 16, 2023)
15-101922194-G-A		not specified	Uncertain significance (Aug 19, 2023)
15-101922206-T-C		not specified	Uncertain significance (Sep 16, 2021)
15-101922221-T-A		not specified	Uncertain significance (Mar 07, 2023)
15-101922266-G-C		not specified	Uncertain significance (Nov 17, 2022)
15-101922305-G-A		not specified	Uncertain significance (Jan 23, 2023)
15-101922338-A-G		not specified	Uncertain significance (Aug 17, 2021)
15-101922411-T-C		not specified	Uncertain significance (Aug 13, 2021)
15-101922480-C-G		not specified	Uncertain significance (Apr 13, 2022)
15-101922488-A-G		not specified	Uncertain significance (Apr 26, 2024)
15-101922539-A-G		not specified	Uncertain significance (Mar 18, 2024)
15-101922581-G-A		not specified	Uncertain significance (Apr 12, 2022)
15-101922634-C-G		not specified	Uncertain significance (Sep 29, 2023)
15-101922727-C-A		not specified	Uncertain significance (May 25, 2022)
15-101922950-A-G		not specified	Uncertain significance (Jun 24, 2022)
15-101922991-C-A		not specified	Likely benign (Feb 11, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
OR4F4	protein_coding	protein_coding	ENST00000326183	1	1054

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.307	0.500	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.474	78	67.1	1.16	0.00000326	1934
Missense in Polyphen		35	28.192	1.2415		733
Synonymous	-0.288	28	26.1	1.07	0.00000136	593
Loss of Function	0.462	0	0.248	0.00	1.04e-8	10

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Olfactory receptor activity;Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.0698

Haploinsufficiency Scores

• pHI: 0.0609
• hipred: N
• hipred_score: 0.187
• ghis: 0.468

Essentials

• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Olfr1289

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity