OR51D1

olfactory receptor family 51 subfamily D member 1, the group of Olfactory receptors, family 51

Basic information

Region (hg38): 11:4637477-4643060

Links

ENSG00000197428 ∙ NCBI:390038 ∙ ∙ HGNC:15193 ∙ Uniprot:Q8NGF3 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR51D1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR51D1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			18			18
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	18	0	0

Variants in OR51D1

This is a list of pathogenic ClinVar variants found in the OR51D1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-4639836-G-A		not specified	Uncertain significance (Apr 25, 2022)
11-4639869-G-A		not specified	Uncertain significance (Aug 03, 2022)
11-4639894-C-T		not specified	Uncertain significance (Jul 06, 2021)
11-4639917-C-T		not specified	Uncertain significance (Jan 26, 2023)
11-4639978-G-A		not specified	Uncertain significance (Oct 26, 2022)
11-4639990-G-A		not specified	Uncertain significance (Oct 29, 2021)
11-4640004-A-G		not specified	Uncertain significance (Mar 18, 2024)
11-4640025-C-G		not specified	Uncertain significance (Jun 11, 2024)
11-4640032-C-A		not specified	Uncertain significance (Dec 13, 2022)
11-4640064-C-T		not specified	Uncertain significance (Dec 03, 2021)
11-4640080-T-G		not specified	Uncertain significance (Jun 16, 2022)
11-4640199-G-A		not specified	Uncertain significance (Nov 10, 2022)
11-4640265-C-G		not specified	Uncertain significance (Mar 29, 2023)
11-4640372-C-G		not specified	Uncertain significance (Sep 01, 2021)
11-4640413-A-C		not specified	Uncertain significance (Oct 05, 2023)
11-4640454-G-A		not specified	Uncertain significance (Dec 13, 2023)
11-4640463-C-T		not specified	Uncertain significance (Feb 27, 2023)
11-4640487-C-T		not specified	Uncertain significance (Sep 22, 2022)
11-4640520-C-T		not specified	Uncertain significance (Apr 30, 2024)
11-4640716-A-G		not specified	Uncertain significance (Feb 15, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
OR51D1	protein_coding	protein_coding	ENST00000357605	1	1124

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00459	0.695	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-1.19	215	171	1.26	0.00000856	2078
Missense in Polyphen		72	60.459	1.1909		793
Synonymous	-1.35	86	71.5	1.20	0.00000353	727
Loss of Function	0.681	4	5.76	0.694	3.35e-7	70

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Olfactory receptor activity;Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Intolerance Scores

• loftool: 0.810
• rvis_EVS: 1.64
• rvis_percentile_EVS: 96.13

Haploinsufficiency Scores

• pHI: 0.254
• hipred: N
• hipred_score: 0.170

Essentials

• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0223

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Olfr557

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity