OR5L1

olfactory receptor family 5 subfamily L member 1, the group of Olfactory receptors, family 5

Basic information

Region (hg38): 11:55811367-55812476

Links

ENSG00000279395 ∙ NCBI:219437 ∙ ∙ HGNC:8350 ∙ Uniprot:Q8NGL2 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR5L1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR5L1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			21	3		24
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	21	4	0

Variants in OR5L1

This is a list of pathogenic ClinVar variants found in the OR5L1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-55811512-G-A		not specified	Uncertain significance (May 18, 2022)
11-55811563-C-T		not specified	Uncertain significance (Mar 15, 2024)
11-55811567-T-C		not specified	Uncertain significance (Dec 27, 2023)
11-55811591-A-G		not specified	Uncertain significance (Feb 17, 2024)
11-55811591-A-T		not specified	Uncertain significance (Jul 10, 2024)
11-55811597-G-A		not specified	Uncertain significance (Dec 20, 2023)
11-55811627-G-A		not specified	Likely benign (Feb 16, 2023)
11-55811641-A-G		not specified	Uncertain significance (Nov 14, 2024)
11-55811708-T-C		not specified	Uncertain significance (Sep 08, 2024)
11-55811709-G-T		not specified	Uncertain significance (Mar 11, 2024)
11-55811722-T-C		not specified	Likely benign (Jul 09, 2024)
11-55811744-C-G		not specified	Uncertain significance (Jan 03, 2024)
11-55811750-T-C		not specified	Uncertain significance (Nov 18, 2023)
11-55811752-G-A		not specified	Uncertain significance (Mar 02, 2023)
11-55811789-T-G		not specified	Uncertain significance (Oct 29, 2024)
11-55811809-C-A		not specified	Uncertain significance (Dec 27, 2023)
11-55811830-C-T		not specified	Uncertain significance (Oct 12, 2021)
11-55811831-G-A		not specified	Uncertain significance (Feb 13, 2024)
11-55811859-A-G			Likely benign (Feb 01, 2024)
11-55811883-G-T		not specified	Uncertain significance (Jan 03, 2024)
11-55811902-T-C		not specified	Uncertain significance (Nov 09, 2021)
11-55811960-G-T		Malignant tumor of prostate	Uncertain significance (-)
11-55812028-G-A		not specified	Uncertain significance (Aug 23, 2021)
11-55812079-T-G		not specified	Uncertain significance (Sep 03, 2024)
11-55812121-C-A		not specified	Uncertain significance (Jan 04, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.0915

Intolerance Scores

• loftool: 0.611
• rvis_EVS: 0.8
• rvis_percentile_EVS: 87.49

Haploinsufficiency Scores

• pHI: 0.0607
• hipred: N
• hipred_score: 0.112

Essentials

• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.100

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Olfr1157

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;sensory perception of smell;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity;odorant binding