RNASE13

ribonuclease A family member 13 (inactive), the group of Ribonuclease A family

Basic information

Region (hg38): 14:21032818-21034807

Links

ENSG00000206150 ∙ NCBI:440163 ∙ ∙ HGNC:25285 ∙ Uniprot:Q5GAN3 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RNASE13 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RNASE13 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			9	1		10
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	9	1	0

Variants in RNASE13

This is a list of pathogenic ClinVar variants found in the RNASE13 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
14-21033828-G-A		not specified	Uncertain significance (Oct 04, 2022)
14-21033889-G-A		not specified	Uncertain significance (Nov 28, 2023)
14-21033918-T-C		not specified	Uncertain significance (Aug 16, 2021)
14-21033930-G-C		not specified	Uncertain significance (May 01, 2024)
14-21033972-G-C		not specified	Uncertain significance (Jun 22, 2023)
14-21033988-T-C		not specified	Uncertain significance (Jan 16, 2024)
14-21034061-A-T		not specified	Uncertain significance (Feb 10, 2022)
14-21034144-G-A		not specified	Uncertain significance (May 01, 2024)
14-21034206-C-T		not specified	Uncertain significance (Apr 13, 2023)
14-21034214-C-T		not specified	Uncertain significance (Nov 17, 2022)
14-21034269-C-T		not specified	Likely benign (Feb 27, 2024)
14-21034282-G-A		not specified	Uncertain significance (Sep 16, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RNASE13	protein_coding	protein_coding	ENST00000382951	1	1966

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.316	0.500	125721	0	6	125727	0.0000239

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.248	94	87.5	1.07	0.00000459	1023
Missense in Polyphen		32	29.556	1.0827		365
Synonymous	0.242	32	33.8	0.947	0.00000170	300
Loss of Function	0.530	0	0.327	0.00	1.32e-8	6

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00000879	0.00000879
Middle Eastern	0.00	0.00
South Asian	0.000131	0.000131
Other	0.000163	0.000163

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Does not exhibit any ribonuclease activity. {ECO:0000305}.

Intolerance Scores

• loftool: 0.513
• rvis_EVS: 0.28
• rvis_percentile_EVS: 71.08

Haploinsufficiency Scores

• pHI: 0.0394
• hipred: N
• hipred_score: 0.123

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.191

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Rnase13

Gene ontology

• Biological process: RNA phosphodiester bond hydrolysis
• Cellular component: extracellular region
• Molecular function: nucleic acid binding;ribonuclease activity