SAA3P

serum amyloid A3, pseudogene

Basic information

Region (hg38): 11:18112626-18116078

Previous symbols: [ "SAA3" ]

Links

ENSG00000166787 ∙ NCBI:6290 ∙ ∙ HGNC:10515 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SAA3P gene.

• Normal pregnancy (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SAA3P gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in SAA3P

This is a list of pathogenic ClinVar variants found in the SAA3P region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-18114094-AGGGATCTGATCAAGCTAGAATTAAGTGACGAAGATTTTTTAGAAAATTAACTGATTACGGAAAAGGGGGAACTCAAATATAGAGTTATAATCATGGTTTATATAATTTCTCTATTAGATAACTCATCTTCATTTTATGCATTTATTACTCCTGGTGTTAAATTGATTGCTTTTATTGAGAGTTTATGACATTTTTACTCTACTTATTCCTCTGAGTTACTGACTTAAATGGCTCCTTGATGTTCAGATTGGCTTAATAAGTACTTCCAAAATTCCTGGCACATTTTATCACTTTCAGCAGCAAAACAAGAGGTAGTGGTTCTCAACCTTTGCTGTGCATAAAAATCTACCGAGGTGCTTAGCAAAGGCAAGATTTCTAGGCTCTGTCCCAAGAGACTGTGGCTGCTGGGGGCAGGGGGTAGGGTATGGACCCGGGAATCTTCATTTCATTTCACAAAGCATCCCAGAATCCAGGTGATTCTCACGCAAGTGGTCCCAGAACAACCCTTTGAAAAATATTAACCTAAGGAATGAAAGATATTTGTAGTTGAGTGTGTGAACATGTAAATAGGATTAAAAGCAAATCCTTAAAACCATTTTTCAGAGACTCAGAAAAATAATAATACCTGAAATTTAAAATACTGCATTCTGAAAACAAAATTTTGCCACTTTATTATGGCTAGTGGGGTATATTTCTCCCTCTCTCTCTCTCTCTGTCTCTCTAGATGGAGTCTTGCTCTGTCTCCTAGGCTGGAGTGCAGTGGTGTGATCACAGCTCACTGCAACCTCTGCCTCCTGAGTTCAAGCAATTCTTCTCCCTCAGCCTCCCGAGAGGCTGGGATTATAGGCGCATGCCACCACACCCGGCTAATTTCTGTATTTTTAGTAGAGACAGGATTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCTTGACCTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCCAGCCCTCGGGGTATATTTCTCTTGCTAGCAGTTTCCTGGCCATATATAAGCCCCAGTAGAACCACCATCAAGGTAATTCACTGTAGGTTTTACTGGGATAAGTGGAGCTAGACTTACCTTCCAAAGGCACCACATCCTATTTGCCATTTCTTAGATAAAGGATGAGCTATGTGTTCACAAATCCGAAACTCTTGTTTTGAAAGCAGCAGAGTACCTTGATTAAGAGCAAGTTCTGCAGAGCAAGACTGCCTGGGTTAATCCTGCTCTGCTTTGGAACTTCTTTACGTATCTTGGGGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAGTGTGTGTGTGTGTGTGTGTGTGTTAGCTTCTCTGTTAAGGGATAATGCTGCTTGCATCATAGGACTAAATGATGGAAACCAATTCATTAGTACATTTAAACAGTGCCTAGTACGTATTAAAATCTCAGCTAAGCTTGGTTGTTTTTATGGGGACGGTTGGCTCCGTTCAGCTTCCCCATGGACTCGCCTCACACTTTTGATCCACCTGCTTCCTGGCTTCCCAGGAGACATAGACATGAACTGTCCCAGATTTCCCACTAGGGGGCAGTAGAGCCCCACCGGTATTATGGGAACATGCACCCCTCAACTCCACATCTCTCTCATGGTCCTGCTGAAAAGAGGCAGCTCACACCTTATGCGACCTCGGCTGGAGGATCCTCATAGAAGAGTGTCAAAGCTGTCCAGAAAAGCATGAGGAACCACGCTTATGAAAAACCATGCCCCTTCTCTATCCATCTGTGGCATCACTAGCACCTTTGCCCAGTGGGGATGTGGCCTCTGCTCAGCTGCATCCTGGGGGCAGCCAGAAGCAGCCTCCTGCCCCCTATCCTGTGGACCTCACCTTGGCCAGCTGCCTTGAGGAATGTTAACCATCCTTGGCTGCTGACACCCAGGACCAGGGAGCAGAAAATGATGCCAGTGGAGAGCTTCATCCTGCTGCAGGGCCAAGGAAACACAACCAAGGATAATACACATTCTGTTTCAAGTTTTTATTTTTTGTAATGTTAGTCCATTCTTTCATTCCAAGAAAAAAACCCACTCGGTTTTACACACGCACACACACACACACACACACACACACAGGTGTATGTGTATAGATAAAAGATAGAAGGTCAGAGGGTCTACGTCTCCATTTCCATTTGTCTCATTGGAATCCCAGTATCTGACAGAAGAGGAGCAGTGACCCAGGATAAAGCAAATAGACAAAAGTCACACCATGTTTGAGAATCATTATTTTAGATTAGAGCCTGCCAAAATTAGGAATTATGCCTCTTTCTGGGTTCTGAGCATATTTTAGGCACAGTAAAATGAAAGTTATAAGGCAGATAGCTGTCAGAGGATTTCCCTGTCCCTTTGGTTCTTATCTAAGGCAATGCTAAGCAACATTTGAATATTCCCTACACAACTTCCATTCCTTGGAAAAGGTGGGATTCCCTGTGGTCAGTGTAGTATCTGAGCTGGC-A		Normal pregnancy	not provided (-)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

• Pathway: Selenium Micronutrient Network;Vitamin B12 Metabolism;Folate Metabolism (Consensus)

Recessive Scores

• pRec: 0.205

Haploinsufficiency Scores

• pHI: 0.0475

Mouse Genome Informatics

• Gene name: Saa3
• Phenotype: adipose tissue phenotype (the observable morphological and physiological characteristics of mammalian fat tissue that are manifested through development and lifespan); growth/size/body region phenotype; homeostasis/metabolism phenotype; immune system phenotype; liver/biliary system phenotype; mortality/aging (the observable characteristics related to the ability of a mammalian organism to live and age that are manifested throughout development and life span)