SGO1-AS1

SGO1 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 3:20174244-21168896

Previous symbols: [ "SGOL1-AS1" ]

Links

ENSG00000231304 ∙ ∙ ∙ HGNC:41081 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SGO1-AS1 gene.

• not provided (6 variants)
• Chronic atrial and intestinal dysrhythmia (2 variants)
• Normal pregnancy (1 variants)
• Inborn genetic diseases (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SGO1-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding	1		2	1	4	8
Total	1	0	2	1	4

Highest pathogenic variant AF is 0.000138

Variants in SGO1-AS1

This is a list of pathogenic ClinVar variants found in the SGO1-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
3-20174353-G-C		Chronic atrial and intestinal dysrhythmia	Uncertain significance (Dec 06, 2021)
3-20174380-G-A		SGO1-related disorder	Likely benign (Mar 21, 2022)
3-20174566-T-G		SGO1-related disorder	Benign (Dec 31, 2019)
3-20174605-T-C			Conflicting classifications of pathogenicity (Jun 05, 2024)
3-20174877-C-T			Benign (Dec 31, 2019)
3-20174992-G-A		not specified	Uncertain significance (Jun 11, 2021)
3-20175019-A-G			Benign (Dec 31, 2019)
3-20175027-T-A		SGO1-related disorder	Benign (Oct 17, 2019)
3-20183961-T-C		Chronic atrial and intestinal dysrhythmia • SGO1-related disorder	Pathogenic (Jan 11, 2023)
3-20183998-G-T		SGO1-related disorder	Benign (Dec 31, 2019)
3-20535979-A-ACCTGGTCTATTTCTAGTCCTGCAGCAATATATGTATTTTCATGATAAAGTGCTATATTAAATGTCTCTGGGGTTTCAAAGACTTGAATTAAAAAAAAAAAAAACTTCTAGAAAAGGATATTCTGAAATGCCAATAGATAAAATTTAAAATTAGAAATTAATATTATTTAATTTAAATAATTAGAGAATGCCATGGCAATTCTCAAAGCCTTCTTTTGTTTGAGGCAAATATTGAGCAAAATATTTTTATGTTATAAGAAAATGTTATCCAGTTATGCTAGTTTTTTTTTTTTTTTTGATATGGAGTCGTGCTCTGTCACCCAGACTGGAGTACAACAGTGCCGTCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTGAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACACACGCCCACAACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCATCACGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATGCACCTGCCTCAGCCTCCCAAACTGCTGGGATTACAGGCGTGAGCCACCGTGCCCTGCTGCTAGTGTTTTTTTTAGTAGTTATTTCAGTGAGAAAATTATGATAACACCAACATCAGTGGAAATGCATTGGTTTGTATAAGGTGTTTAATTTTTGTCCTGGTCATTTCACAATGCCTTATGGTCATTTTTATATTTACATAAATTTAAAATTTTGTAAATTGTTTTAATATAATTATTGTAATGTAAATTGTTATATATTTAATAGTTCATGCCTCCCCAAGGAATGGATGAAGGAAGTCTCAGAGGTCTATTAAATTATTTGAATTCTTATGCAGTTTAATATCCATCTTAATGTAATATAATATTTTAAAAGAATTCTACATTTGTATAATGTAGAATTGTGTAGATTTCCTTTAAAATGTATGTAAAACATTTCTTGAGTTATAAATATTTCTTTCAATCCAAATATTCCATGTGTTTAGAATATAACATTACTTACTTTTGTTGGTATAATTGAATTATTCTGATGATCAAAATCACATGTGTATGTGAAGTTATTATTTGTGGTAGTTTTAAAACATAGTTGTAAGTTCTTTGATACTTCTCCCATTGAGAGCTGGCAGCTAAGTCCTCTCCCCTTGAATCTGGGTCAGCCTGTGACTTCTTCCATTAATACAGTGACCTGGAAGTTATGTTATGTGATTTCTAATGCTGGGTCATAACAAACCGTGAAGCTCTTGTTGTCTGCTGAAATACCTGCCTTGGTGCTCTTAGGCATCATGTAAGAATATCATCAATACCTTGAGACTTCCATGCTCTGAAGGAGCCCGAGCCATGTAAAAAGGCCAGATAAAGACTGACGTTGGAATTAGCTCAGTCCTGCCTTCAGTACATTTTTGCTTAGTCACCAGACATGTGAAGGAAGTCTGTCTATCACGTTAGCCCCCAGTCATCCTAGTCACCCCCAGTCATTGAACTCTTCCCAGCTGAGGAATCAAATGATGTAACTATCAGATGATAGCCATCCCTGCTATGCCTTACACTGAATTCTTGACCCCAAAATTCATGAGCATAGAAAATTGATTGCTGCTTTATGCTACTACTTTTGGATTGGTATTTGACACAGCAAAATTTATTGTAATTTTTCTGGATGATGTATATATTTACATTCTTCCATTATTGCATGTACTTCTAAAATACTCAGACCAGCAAATAAATTAAACACATACAATAATATGAAACAGCAGAGTGTTGCTGATTATGCAATATAAACCATTTCTAAGTTTACCTTTTCTTTTTATAAAAACATATATTCCTAATATATCCAGGGTATAAAAAATTGCATTAAAATATTTAGTGTCTCTCTAGATGTTTATAGTATTTAGGGAGCATGTGACAGTCTTTTATAGCACTATAAAAAGTGTGTCAGTCATTTCCAAACTTTTTTGAATAGGCATCCACCAGTGTATTCATGCACAAATTCACAAAGACAAAAAAATAAAAGAACGAGATGAAAACTGAATAGAAATAGAAATTTTCAAAATTTTGCTTGATGCCACAATTAAATGTCTTGCCAACCTGTCAAAGTACCCACATCTTACTCTAAAGATCACTGAACTTAACAGTGGATAAAAAAGAATATCCAAATATTTTTGAAATGGTACAAAAATGTAAGTTAACTATTTGGGCTCATCACCAGTTTCATCCTCTCACACTTATATTGACTTTTGTGATAATCACATCCATTATTTTACGAACTTAGCCTTCAAGAGAGAATAATGAATGGATCATTGACTGAACTGCAGTCAATAGGCTATTATAATTTCCCTTAATACAGCAATATTGAAGAGTCCCAGTTTGTTTGAAAGCTTACAGTTGCTGAACAACTATAAAAAATGAATATGCATTATAATGAAGACACTGAGAAAACATTCTGAAAAGTTTAGTAATTAGAAAGAAAGAGCAAAAAGTCACAAAACAAGAAAACTATTTTCAAGGTTAAGTTGTTTTAGAATTTGGCTAAGTTTGTGATATATGTTTATGAGGTGCAAATTTGATTTCCAATCCAGCCTACATTTACTTCATGTTTACTGTATGCTAGATATACTGAATGCCTTCTCTCAGATATTATTTAAACTGCCAGCCTCAGATACCTCTAATCTTTCCTATTCAAAATCATTTATATTGGGAATTTTTAAAAAATAGATGAAATGAGAGAGATATATTACATTTTAAGGAAATCATGCTATATGATAAAGGTCAGAAAATGTGGCCTGCCTATTTGTTCTGTCAATAAAGTTTTACTGAAACACAACTCATTTGTTTACATATTGTCTTGCTCTTGTGCTACAACCGTAGAGGTGAGTAGTTGTGTTAGAGACTATATGGCCTGGAAAGCTTACAATATATACAATCTGGTTCATTATAGAAAAAACTCGCTGGACCCTGATTTAAGAGATATGCTAAACCAACTTCTTTACTTCACTACAGTTTGCTAGCAGTCAGGACAGAATGCTATTTCATAGTGGGTGGGGTGGCTCAAGTGGTTTGTAAAGAAAATTAGTGCCTTTCACCTAGAAAGTGATACTTTAAATTGTCACTGATTGGCATTATTAACCTAGTCAAGCAAATTAGTACTTCACACTTGAGATAAATCAGGTTGGAAAAATTAAAAAAAATAACCTGTGAGATTATGAAATAGTGTACATTTAAAACATGTTCACTATTGGGTTACTGTAACCACCCAATGGGTTGGTTCACCTGGCCTGCTGCCTAGATGTTACCAGTGGAAGGTACCAGGGTTACTGGTGGTGAATCTGTATGGGTCTGCAGCAACTTCAATTCTTGCCTCCTCAGAAGAAATGATTCAACTGAGAAGCATAAGGCAGGAAAAGGGACTGAGGCAAGTTTCAGAGCAGAAGTTGAAGTTTATTTAAAAAGGCTTTAGAATAGGAAAGAAAGGAAAGTACACGTGGAAAAAACCTGAGTAGGCACATGAAGGTCAAGTGCAGTGTTTAACCTTGATCCTAGGACTTTATAGGCTGGCCCTTTCCAGTGATTCTTCCCTTAGGGTGCGTTGCCTGCTTGGCAGGGCCTTCCTTGGGAATTGAGCACATGCATTGTATTGAGGAAGTTGTACGCATCCCCATCTGATGCTTTCTCCCCTTTTCTAGTGGGGTGCCCCTAGAAGGTCGTACTATGCCATTTTGTCTCCTAATGCATATGCCCAAGATGTTGCTTCTCCTTGGCATCTGCGTTCAGTTAACATTTTACTGCAACAGGTGTGGACAATTAGGAAATGGCCTCCCCCTGGCGCCAGCTGCCAGTTTATCACTTTTAGAGAGACAATGCAATCTTTGTCAAACCATAACCTGACTTTCCTAGTGGGTCGGGGAGCCCCCTCTCCTGCCCTGCTCATGCCTGTCTAATTACCTGTAACATAGACAGATCTGATTTATCAAGATGGGGGAATCGCAATGGAGAAAGAGTAATTCACGCAGAGCTGGCTGTGCAGGAGACCAGAGTTTTATTATTATTCAAATCAGTTTCTCTGAGAATTTGGGGATTGGAGTTTTCAAGGATAATTTGGCGGGTAGGTGTTTGGGAAGAGGGGAGTGCTGATTGTTCAGGTTGGAGATGGAATCACAGGGATCAAAGTGAGGTTTTTTTTGCTGTCTTCTGTTCCCGGATGGGATCACGGAGCTGGTTGAGCCAGATTAGCAGTCTGGGTAATGTCAGCTGATCCATGGAGTGCAGGGTCTGCAAAACATCTCAAGCACTAATCTTAGATTTTGCAATATATAGTAATGTTATCCCCAGGAGCAACCTGGGGAGGTTCAGACTCTTGCAGCCAGAGGCTGCATGACCCCTAGACTGTCATTTCTAATCTTGTAGCTAATTTGTTAGTCCTGCAAAGGAAGACTGATCCCCAGGCAAGAAGGGTGTCTTTTTGGGAAAGGACTATTATCAATTTTGTTTCAAGTGATAAACTAAATTCCTTCCCAAGGTTAGTTCAGCCTATGCCCAGGAATGAACAAGGCCAGCTTAAAGGTTAGAAGCAAGATGGAGTCAGTTGTCTGTCCCTTTTACTGTCATAATTTCCTCAGTTATAATTTTTGGAAAGGTGGTTTCAGTACTTAGAATTTAGAGCCATTCAGCATCTTTCAAATGAGTGTAGAGAGTAATTTCTTTATCTCTCTGGGGAAATACCTTTGATTTTATCATTTGCCCAGGTCTTTTTGGCTAGTGTTACCCTGGCTTGTGTGGCTATGCGTGTTGGGGCTAGAGTAACAGCACTGGTGGGCTGAGTTACCAGGAGATAGAATGTGTTAGGCTGGGCTGTGTTTTGGTGTGGCTTTGATCTGAAACTATGTATGAAGACTTGAGCCAAGGTGAATATCAGAGGAATAGCATTAATCTATGAATTCTAAGACATATTTATATAAAGGAGGTTATGGTAGAATTCAGAAGAGGAAATAGGACGATCTTAAGAAATGGATTTAGTGCCTGACTAAATGAAATGAAATACTTCTGGATGACACAACTCAGGGGCCCTGGTGGCTTCCCTTTTTGGGGAATTGGTGAAAGGTGTGTGTCAGAATGGCTTAGCCGTTTCATTATTTTTCTTCCAAGTCAGGAAATCAGCCAGTTCCATTAGTTGTTGCTAATAAAGCTGTGCTGGGACAGATTGCACGTACCTACCCACCCAGTCCTACAGCTTTATTTATTTCTATCATTCATTGATGGTGGTGTTAAATGGAGAAGCCCATCAGATAATGCCTGGAACAGAGCATCTACTCAGGATATGCTCACTAAATGAATTAAAATAATTTAACATTAGATATTCAGTGTGAGCATAATTGAACAGGTTTTCCTTCAGTTACTGTCACAAAAGAATGGCATCATGTAAATGTAAAATACAAATACATATAAATATAAAATGAATTAATCATCTAGTTTTCCACTTACTAGATTATTCCAGTCCAGTTTAATTACAGGCTGTTTTCATGCCTACTCTGTTCTGCAGATAATCAAATCACGTATTTTTTCTAAAATGTAATTTTTTATAGCATTAGTTCAGCAAAGCATGATGGAGAGAATAATAAGCCTTGAAAACCAGTTGCTATCTTACTTTTTACCTACTAGAGTTAGTCCTCTCCTAACACACAGAGCCATGCTTTCTGCAAAGAAAATGTTGATTTCTTCTGAATACTACTTCCTTCCCCAACACGTGCAAGTATTTTTCTGTTCTAAGTGAACATATTTTCTCCCTTGCGGGACAGACAGTGGAGAAGTTCAAAAAGGCAAGCACTGTCTTGTGCTTTCCTGAGGCATGGGTAGAGTCCACTATCATTCAGCTAGCCTGACTCCCCAAACTCCAGTATCTTTTATCTCTTTTATCATTTTGTATTGGTGTCTTTCTGCTTACTGGTGTATTGGAAATATTTTTTAAAAGCCAAGCAAAATCTCTATCTGCATTATTCTTTTAAGATAAATGGATTAGGCATGGCTAATATTTAATATACAGATGGACATCTGATGCCATTATTCAGTCTGCCTGTTGGGCTTTTAAGGCAAGGCTATATACCTCCCAAGAAGAATGAAGATCTTTCTTCCCCAAGATCAAAGACACTAAATCCCAGACCATAGAATGTACAGTATCAGGAAACCCTACCTAGTAATTT		Normal pregnancy	not provided (-)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP