SGO1-AS1

SGO1 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 3:20174244-21168896

Previous symbols: [ "SGOL1-AS1" ]

Links

ENSG00000231304HGNC:41081GenCCjaxSfariGnomADPubmedClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SGO1-AS1 gene.

  • not provided (6 variants)
  • Chronic atrial and intestinal dysrhythmia (2 variants)
  • Normal pregnancy (1 variants)
  • Inborn genetic diseases (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SGO1-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type Pathogenic Likely pathogenic VUS Likely benign Benign Sum
synonymous
0
missense
0
nonsense
0
start loss
0
frameshift
0
inframe indel
0
splice donor/acceptor (+/-2bp)
0
splice region
0
non coding
1
clinvar
2
clinvar
1
clinvar
4
clinvar
8
Total 1 0 2 1 4

Highest pathogenic variant AF is 0.000138

Variants in SGO1-AS1

This is a list of pathogenic ClinVar variants found in the SGO1-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position Type Phenotype Significance ClinVar
3-20174353-G-C Cardiovascular phenotype • Chronic atrial and intestinal dysrhythmia Uncertain significance (Apr 09, 2025)2435915
3-20174380-G-A SGO1-related disorder Likely benign (Mar 21, 2022)3038529
3-20174566-T-G not specified • SGO1-related disorder Benign (Apr 09, 2025)791914
3-20174570-G-A Cardiovascular phenotype Uncertain significance (Apr 09, 2025)3894919
3-20174605-T-C not specified Conflicting classifications of pathogenicity (Apr 09, 2025)787255
3-20174877-C-T Benign (Dec 31, 2019)714173
3-20174992-G-A not specified Uncertain significance (Jun 11, 2021)2281372
3-20175019-A-G not specified Benign/Likely benign (Apr 09, 2025)382303
3-20175027-T-A SGO1-related disorder • not specified Benign (Apr 09, 2025)3059284
3-20183705-A-G Cardiovascular phenotype Uncertain significance (Apr 09, 2025)3895218
3-20183757-A-G not specified Likely benign (Apr 09, 2025)3894786
3-20183937-C-A not specified Likely benign (Apr 09, 2025)3895217
3-20183961-T-C Chronic atrial and intestinal dysrhythmia • SGO1-related disorder • Cardiovascular phenotype Pathogenic (May 09, 2024)162627
3-20183998-G-T SGO1-related disorder Benign (Dec 31, 2019)760207
3-20535979-A-ACCTGGTCTATTTCTAGTCCTGCAGCAATATATGTATTTTCATGATAAAGTGCTATATTAAATGTCTCTGGGGTTTCAAAGACTTGAATTAAAAAAAAAAAAAACTTCTAGAAAAGGATATTCTGAAATGCCAATAGATAAAATTTAAAATTAGAAATTAATATTATTTAATTTAAATAATTAGAGAATGCCATGGCAATTCTCAAAGCCTTCTTTTGTTTGAGGCAAATATTGAGCAAAATATTTTTATGTTATAAGAAAATGTTATCCAGTTATGCTAGTTTTTTTTTTTTTTTTGATATGGAGTCGTGCTCTGTCACCCAGACTGGAGTACAACAGTGCCGTCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTGAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACACACGCCCACAACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCATCACGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATGCACCTGCCTCAGCCTCCCAAACTGCTGGGATTACAGGCGTGAGCCACCGTGCCCTGCTGCTAGTGTTTTTTTTAGTAGTTATTTCAGTGAGAAAATTATGATAACACCAACATCAGTGGAAATGCATTGGTTTGTATAAGGTGTTTAATTTTTGTCCTGGTCATTTCACAATGCCTTATGGTCATTTTTATATTTACATAAATTTAAAATTTTGTAAATTGTTTTAATATAATTATTGTAATGTAAATTGTTATATATTTAATAGTTCATGCCTCCCCAAGGAATGGATGAAGGAAGTCTCAGAGGTCTATTAAATTATTTGAATTCTTATGCAGTTTAATATCCATCTTAATGTAATATAATATTTTAAAAGAATTCTACATTTGTATAATGTAGAATTGTGTAGATTTCCTTTAAAATGTATGTAAAACATTTCTTGAGTTATAAATATTTCTTTCAATCCAAATATTCCATGTGTTTAGAATATAACATTACTTACTTTTGTTGGTATAATTGAATTATTCTGATGATCAAAATCACATGTGTATGTGAAGTTATTATTTGTGGTAGTTTTAAAACATAGTTGTAAGTTCTTTGATACTTCTCCCATTGAGAGCTGGCAGCTAAGTCCTCTCCCCTTGAATCTGGGTCAGCCTGTGACTTCTTCCATTAATACAGTGACCTGGAAGTTATGTTATGTGATTTCTAATGCTGGGTCATAACAAACCGTGAAGCTCTTGTTGTCTGCTGAAATACCTGCCTTGGTGCTCTTAGGCATCATGTAAGAATATCATCAATACCTTGAGACTTCCATGCTCTGAAGGAGCCCGAGCCATGTAAAAAGGCCAGATAAAGACTGACGTTGGAATTAGCTCAGTCCTGCCTTCAGTACATTTTTGCTTAGTCACCAGACATGTGAAGGAAGTCTGTCTATCACGTTAGCCCCCAGTCATCCTAGTCACCCCCAGTCATTGAACTCTTCCCAGCTGAGGAATCAAATGATGTAACTATCAGATGATAGCCATCCCTGCTATGCCTTACACTGAATTCTTGACCCCAAAATTCATGAGCATAGAAAATTGATTGCTGCTTTATGCTACTACTTTTGGATTGGTATTTGACACAGCAAAATTTATTGTAATTTTTCTGGATGATGTATATATTTACATTCTTCCATTATTGCATGTACTTCTAAAATACTCAGACCAGCAAATAAATTAAACACATACAATAATATGAAACAGCAGAGTGTTGCTGATTATGCAATATAAACCATTTCTAAGTTTACCTTTTCTTTTTATAAAAACATATATTCCTAATATATCCAGGGTATAAAAAATTGCATTAAAATATTTAGTGTCTCTCTAGATGTTTATAGTATTTAGGGAGCATGTGACAGTCTTTTATAGCACTATAAAAAGTGTGTCAGTCATTTCCAAACTTTTTTGAATAGGCATCCACCAGTGTATTCATGCACAAATTCACAAAGACAAAAAAATAAAAGAACGAGATGAAAACTGAATAGAAATAGAAATTTTCAAAATTTTGCTTGATGCCACAATTAAATGTCTTGCCAACCTGTCAAAGTACCCACATCTTACTCTAAAGATCACTGAACTTAACAGTGGATAAAAAAGAATATCCAAATATTTTTGAAATGGTACAAAAATGTAAGTTAACTATTTGGGCTCATCACCAGTTTCATCCTCTCACACTTATATTGACTTTTGTGATAATCACATCCATTATTTTACGAACTTAGCCTTCAAGAGAGAATAATGAATGGATCATTGACTGAACTGCAGTCAATAGGCTATTATAATTTCCCTTAATACAGCAATATTGAAGAGTCCCAGTTTGTTTGAAAGCTTACAGTTGCTGAACAACTATAAAAAATGAATATGCATTATAATGAAGACACTGAGAAAACATTCTGAAAAGTTTAGTAATTAGAAAGAAAGAGCAAAAAGTCACAAAACAAGAAAACTATTTTCAAGGTTAAGTTGTTTTAGAATTTGGCTAAGTTTGTGATATATGTTTATGAGGTGCAAATTTGATTTCCAATCCAGCCTACATTTACTTCATGTTTACTGTATGCTAGATATACTGAATGCCTTCTCTCAGATATTATTTAAACTGCCAGCCTCAGATACCTCTAATCTTTCCTATTCAAAATCATTTATATTGGGAATTTTTAAAAAATAGATGAAATGAGAGAGATATATTACATTTTAAGGAAATCATGCTATATGATAAAGGTCAGAAAATGTGGCCTGCCTATTTGTTCTGTCAATAAAGTTTTACTGAAACACAACTCATTTGTTTACATATTGTCTTGCTCTTGTGCTACAACCGTAGAGGTGAGTAGTTGTGTTAGAGACTATATGGCCTGGAAAGCTTACAATATATACAATCTGGTTCATTATAGAAAAAACTCGCTGGACCCTGATTTAAGAGATATGCTAAACCAACTTCTTTACTTCACTACAGTTTGCTAGCAGTCAGGACAGAATGCTATTTCATAGTGGGTGGGGTGGCTCAAGTGGTTTGTAAAGAAAATTAGTGCCTTTCACCTAGAAAGTGATACTTTAAATTGTCACTGATTGGCATTATTAACCTAGTCAAGCAAATTAGTACTTCACACTTGAGATAAATCAGGTTGGAAAAATTAAAAAAAATAACCTGTGAGATTATGAAATAGTGTACATTTAAAACATGTTCACTATTGGGTTACTGTAACCACCCAATGGGTTGGTTCACCTGGCCTGCTGCCTAGATGTTACCAGTGGAAGGTACCAGGGTTACTGGTGGTGAATCTGTATGGGTCTGCAGCAACTTCAATTCTTGCCTCCTCAGAAGAAATGATTCAACTGAGAAGCATAAGGCAGGAAAAGGGACTGAGGCAAGTTTCAGAGCAGAAGTTGAAGTTTATTTAAAAAGGCTTTAGAATAGGAAAGAAAGGAAAGTACACGTGGAAAAAACCTGAGTAGGCACATGAAGGTCAAGTGCAGTGTTTAACCTTGATCCTAGGACTTTATAGGCTGGCCCTTTCCAGTGATTCTTCCCTTAGGGTGCGTTGCCTGCTTGGCAGGGCCTTCCTTGGGAATTGAGCACATGCATTGTATTGAGGAAGTTGTACGCATCCCCATCTGATGCTTTCTCCCCTTTTCTAGTGGGGTGCCCCTAGAAGGTCGTACTATGCCATTTTGTCTCCTAATGCATATGCCCAAGATGTTGCTTCTCCTTGGCATCTGCGTTCAGTTAACATTTTACTGCAACAGGTGTGGACAATTAGGAAATGGCCTCCCCCTGGCGCCAGCTGCCAGTTTATCACTTTTAGAGAGACAATGCAATCTTTGTCAAACCATAACCTGACTTTCCTAGTGGGTCGGGGAGCCCCCTCTCCTGCCCTGCTCATGCCTGTCTAATTACCTGTAACATAGACAGATCTGATTTATCAAGATGGGGGAATCGCAATGGAGAAAGAGTAATTCACGCAGAGCTGGCTGTGCAGGAGACCAGAGTTTTATTATTATTCAAATCAGTTTCTCTGAGAATTTGGGGATTGGAGTTTTCAAGGATAATTTGGCGGGTAGGTGTTTGGGAAGAGGGGAGTGCTGATTGTTCAGGTTGGAGATGGAATCACAGGGATCAAAGTGAGGTTTTTTTTGCTGTCTTCTGTTCCCGGATGGGATCACGGAGCTGGTTGAGCCAGATTAGCAGTCTGGGTAATGTCAGCTGATCCATGGAGTGCAGGGTCTGCAAAACATCTCAAGCACTAATCTTAGATTTTGCAATATATAGTAATGTTATCCCCAGGAGCAACCTGGGGAGGTTCAGACTCTTGCAGCCAGAGGCTGCATGACCCCTAGACTGTCATTTCTAATCTTGTAGCTAATTTGTTAGTCCTGCAAAGGAAGACTGATCCCCAGGCAAGAAGGGTGTCTTTTTGGGAAAGGACTATTATCAATTTTGTTTCAAGTGATAAACTAAATTCCTTCCCAAGGTTAGTTCAGCCTATGCCCAGGAATGAACAAGGCCAGCTTAAAGGTTAGAAGCAAGATGGAGTCAGTTGTCTGTCCCTTTTACTGTCATAATTTCCTCAGTTATAATTTTTGGAAAGGTGGTTTCAGTACTTAGAATTTAGAGCCATTCAGCATCTTTCAAATGAGTGTAGAGAGTAATTTCTTTATCTCTCTGGGGAAATACCTTTGATTTTATCATTTGCCCAGGTCTTTTTGGCTAGTGTTACCCTGGCTTGTGTGGCTATGCGTGTTGGGGCTAGAGTAACAGCACTGGTGGGCTGAGTTACCAGGAGATAGAATGTGTTAGGCTGGGCTGTGTTTTGGTGTGGCTTTGATCTGAAACTATGTATGAAGACTTGAGCCAAGGTGAATATCAGAGGAATAGCATTAATCTATGAATTCTAAGACATATTTATATAAAGGAGGTTATGGTAGAATTCAGAAGAGGAAATAGGACGATCTTAAGAAATGGATTTAGTGCCTGACTAAATGAAATGAAATACTTCTGGATGACACAACTCAGGGGCCCTGGTGGCTTCCCTTTTTGGGGAATTGGTGAAAGGTGTGTGTCAGAATGGCTTAGCCGTTTCATTATTTTTCTTCCAAGTCAGGAAATCAGCCAGTTCCATTAGTTGTTGCTAATAAAGCTGTGCTGGGACAGATTGCACGTACCTACCCACCCAGTCCTACAGCTTTATTTATTTCTATCATTCATTGATGGTGGTGTTAAATGGAGAAGCCCATCAGATAATGCCTGGAACAGAGCATCTACTCAGGATATGCTCACTAAATGAATTAAAATAATTTAACATTAGATATTCAGTGTGAGCATAATTGAACAGGTTTTCCTTCAGTTACTGTCACAAAAGAATGGCATCATGTAAATGTAAAATACAAATACATATAAATATAAAATGAATTAATCATCTAGTTTTCCACTTACTAGATTATTCCAGTCCAGTTTAATTACAGGCTGTTTTCATGCCTACTCTGTTCTGCAGATAATCAAATCACGTATTTTTTCTAAAATGTAATTTTTTATAGCATTAGTTCAGCAAAGCATGATGGAGAGAATAATAAGCCTTGAAAACCAGTTGCTATCTTACTTTTTACCTACTAGAGTTAGTCCTCTCCTAACACACAGAGCCATGCTTTCTGCAAAGAAAATGTTGATTTCTTCTGAATACTACTTCCTTCCCCAACACGTGCAAGTATTTTTCTGTTCTAAGTGAACATATTTTCTCCCTTGCGGGACAGACAGTGGAGAAGTTCAAAAAGGCAAGCACTGTCTTGTGCTTTCCTGAGGCATGGGTAGAGTCCACTATCATTCAGCTAGCCTGACTCCCCAAACTCCAGTATCTTTTATCTCTTTTATCATTTTGTATTGGTGTCTTTCTGCTTACTGGTGTATTGGAAATATTTTTTAAAAGCCAAGCAAAATCTCTATCTGCATTATTCTTTTAAGATAAATGGATTAGGCATGGCTAATATTTAATATACAGATGGACATCTGATGCCATTATTCAGTCTGCCTGTTGGGCTTTTAAGGCAAGGCTATATACCTCCCAAGAAGAATGAAGATCTTTCTTCCCCAAGATCAAAGACACTAAATCCCAGACCATAGAATGTACAGTATCAGGAAACCCTACCTAGTAATTT Normal pregnancy not provided (-)156841

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP