SLCO4A1-AS1

SLCO4A1 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 20:62663019-62666724

Links

ENSG00000232803NCBI:100127888HGNC:40537GenCCjaxSfariGnomADPubmedClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SLCO4A1-AS1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SLCO4A1-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type Pathogenic Likely pathogenic VUS Likely benign Benign Sum
synonymous
0
missense
0
nonsense
0
start loss
0
frameshift
0
inframe indel
0
splice donor/acceptor (+/-2bp)
0
splice region
0
non coding
8
clinvar
2
clinvar
10
Total 0 0 8 2 0

Variants in SLCO4A1-AS1

This is a list of pathogenic ClinVar variants found in the SLCO4A1-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position Type Phenotype Significance ClinVar
20-62664951-T-C not specified Uncertain significance (Jan 25, 2023)2479003
20-62666388-G-T not specified Uncertain significance (Mar 11, 2025)3798517
20-62666398-C-T not specified Uncertain significance (Aug 02, 2023)2615652
20-62666413-C-G not specified Uncertain significance (Sep 10, 2024)3445402
20-62666452-G-A not specified Uncertain significance (Feb 16, 2023)2467664
20-62666458-C-T not specified Uncertain significance (Jul 09, 2024)3445400
20-62666460-G-A not specified Uncertain significance (Mar 01, 2025)3798505
20-62666461-C-T not specified Uncertain significance (May 18, 2023)2518903
20-62666514-G-A not specified Uncertain significance (Jul 14, 2024)3445401
20-62666521-C-T not specified Likely benign (Jun 17, 2024)3320383
20-62666553-G-A not specified Uncertain significance (Jul 25, 2023)2592469
20-62666571-G-A not specified Likely benign (May 09, 2023)2546171

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP