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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-111230935-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=111230935&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 111230935,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "ENST00000369748.9",
"consequences": [
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "c.264C>T",
"hgvs_p": "p.Leu88Leu",
"transcript": "NM_004000.3",
"protein_id": "NP_003991.2",
"transcript_support_level": null,
"aa_start": 88,
"aa_end": null,
"aa_length": 390,
"cds_start": 264,
"cds_end": null,
"cds_length": 1173,
"cdna_start": 281,
"cdna_end": null,
"cdna_length": 1416,
"mane_select": "ENST00000369748.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "c.264C>T",
"hgvs_p": "p.Leu88Leu",
"transcript": "ENST00000369748.9",
"protein_id": "ENSP00000358763.4",
"transcript_support_level": 1,
"aa_start": 88,
"aa_end": null,
"aa_length": 390,
"cds_start": 264,
"cds_end": null,
"cds_length": 1173,
"cdna_start": 281,
"cdna_end": null,
"cdna_length": 1416,
"mane_select": "NM_004000.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "c.27C>T",
"hgvs_p": "p.Leu9Leu",
"transcript": "ENST00000466741.5",
"protein_id": "ENSP00000437086.1",
"transcript_support_level": 1,
"aa_start": 9,
"aa_end": null,
"aa_length": 311,
"cds_start": 27,
"cds_end": null,
"cds_length": 936,
"cdna_start": 384,
"cdna_end": null,
"cdna_length": 1518,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "c.264C>T",
"hgvs_p": "p.Leu88Leu",
"transcript": "ENST00000445067.6",
"protein_id": "ENSP00000437082.1",
"transcript_support_level": 5,
"aa_start": 88,
"aa_end": null,
"aa_length": 390,
"cds_start": 264,
"cds_end": null,
"cds_length": 1173,
"cdna_start": 1035,
"cdna_end": null,
"cdna_length": 2169,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "c.234C>T",
"hgvs_p": "p.Leu78Leu",
"transcript": "NM_001025197.1",
"protein_id": "NP_001020368.1",
"transcript_support_level": null,
"aa_start": 78,
"aa_end": null,
"aa_length": 380,
"cds_start": 234,
"cds_end": null,
"cds_length": 1143,
"cdna_start": 305,
"cdna_end": null,
"cdna_length": 1440,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "c.234C>T",
"hgvs_p": "p.Leu78Leu",
"transcript": "ENST00000369744.6",
"protein_id": "ENSP00000358759.2",
"transcript_support_level": 5,
"aa_start": 78,
"aa_end": null,
"aa_length": 380,
"cds_start": 234,
"cds_end": null,
"cds_length": 1143,
"cdna_start": 354,
"cdna_end": null,
"cdna_length": 1489,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "c.27C>T",
"hgvs_p": "p.Leu9Leu",
"transcript": "NM_001025199.2",
"protein_id": "NP_001020370.1",
"transcript_support_level": null,
"aa_start": 9,
"aa_end": null,
"aa_length": 311,
"cds_start": 27,
"cds_end": null,
"cds_length": 936,
"cdna_start": 340,
"cdna_end": null,
"cdna_length": 1475,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "c.27C>T",
"hgvs_p": "p.Leu9Leu",
"transcript": "ENST00000524472.5",
"protein_id": "ENSP00000432049.1",
"transcript_support_level": 2,
"aa_start": 9,
"aa_end": null,
"aa_length": 311,
"cds_start": 27,
"cds_end": null,
"cds_length": 936,
"cdna_start": 256,
"cdna_end": null,
"cdna_length": 1435,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "c.264C>T",
"hgvs_p": "p.Leu88Leu",
"transcript": "ENST00000528451.5",
"protein_id": "ENSP00000436077.1",
"transcript_support_level": 5,
"aa_start": 88,
"aa_end": null,
"aa_length": 219,
"cds_start": 264,
"cds_end": null,
"cds_length": 662,
"cdna_start": 548,
"cdna_end": null,
"cdna_length": 946,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "c.264C>T",
"hgvs_p": "p.Leu88Leu",
"transcript": "ENST00000486561.6",
"protein_id": "ENSP00000431968.1",
"transcript_support_level": 5,
"aa_start": 88,
"aa_end": null,
"aa_length": 200,
"cds_start": 264,
"cds_end": null,
"cds_length": 605,
"cdna_start": 573,
"cdna_end": null,
"cdna_length": 914,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "c.264C>T",
"hgvs_p": "p.Leu88Leu",
"transcript": "ENST00000474304.6",
"protein_id": "ENSP00000436380.2",
"transcript_support_level": 5,
"aa_start": 88,
"aa_end": null,
"aa_length": 181,
"cds_start": 264,
"cds_end": null,
"cds_length": 548,
"cdna_start": 316,
"cdna_end": null,
"cdna_length": 600,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "c.27C>T",
"hgvs_p": "p.Leu9Leu",
"transcript": "ENST00000477185.6",
"protein_id": "ENSP00000436272.1",
"transcript_support_level": 5,
"aa_start": 9,
"aa_end": null,
"aa_length": 168,
"cds_start": 27,
"cds_end": null,
"cds_length": 508,
"cdna_start": 276,
"cdna_end": null,
"cdna_length": 757,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "c.168C>T",
"hgvs_p": "p.Leu56Leu",
"transcript": "ENST00000533831.6",
"protein_id": "ENSP00000433176.2",
"transcript_support_level": 5,
"aa_start": 56,
"aa_end": null,
"aa_length": 159,
"cds_start": 168,
"cds_end": null,
"cds_length": 480,
"cdna_start": 170,
"cdna_end": null,
"cdna_length": 482,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "c.27C>T",
"hgvs_p": "p.Leu9Leu",
"transcript": "ENST00000467038.6",
"protein_id": "ENSP00000431978.1",
"transcript_support_level": 5,
"aa_start": 9,
"aa_end": null,
"aa_length": 144,
"cds_start": 27,
"cds_end": null,
"cds_length": 436,
"cdna_start": 323,
"cdna_end": null,
"cdna_length": 732,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "c.27C>T",
"hgvs_p": "p.Leu9Leu",
"transcript": "ENST00000497587.6",
"protein_id": "ENSP00000436006.1",
"transcript_support_level": 5,
"aa_start": 9,
"aa_end": null,
"aa_length": 121,
"cds_start": 27,
"cds_end": null,
"cds_length": 368,
"cdna_start": 248,
"cdna_end": null,
"cdna_length": 589,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "n.298C>T",
"hgvs_p": null,
"transcript": "ENST00000526684.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 541,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"hgvs_c": "n.288C>T",
"hgvs_p": null,
"transcript": "ENST00000530597.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 467,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "CHI3L2",
"gene_hgnc_id": 1933,
"dbsnp": "rs146994563",
"frequency_reference_population": 0.0007596411,
"hom_count_reference_population": 0,
"allele_count_reference_population": 1226,
"gnomad_exomes_af": 0.000766268,
"gnomad_genomes_af": 0.00069604,
"gnomad_exomes_ac": 1120,
"gnomad_genomes_ac": 106,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.01899999938905239,
"computational_prediction_selected": "Benign",
"computational_source_selected": "REVEL",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.019,
"revel_prediction": "Benign",
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.64,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -3.466,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -5,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4_Moderate,BP6_Moderate,BP7",
"acmg_by_gene": [
{
"score": -5,
"benign_score": 5,
"pathogenic_score": 0,
"criteria": [
"BP4_Moderate",
"BP6_Moderate",
"BP7"
],
"verdict": "Likely_benign",
"transcript": "ENST00000369748.9",
"gene_symbol": "CHI3L2",
"hgnc_id": 1933,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.264C>T",
"hgvs_p": "p.Leu88Leu"
}
],
"clinvar_disease": "not provided",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}