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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-113896423-T-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=113896423&ref=T&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 113896423,
"ref": "T",
"alt": "G",
"effect": "synonymous_variant",
"transcript": "NM_006594.5",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1345A>C",
"hgvs_p": "p.Arg449Arg",
"transcript": "NM_001253852.3",
"protein_id": "NP_001240781.1",
"transcript_support_level": null,
"aa_start": 449,
"aa_end": null,
"aa_length": 739,
"cds_start": 1345,
"cds_end": null,
"cds_length": 2220,
"cdna_start": 1427,
"cdna_end": null,
"cdna_length": 3173,
"mane_select": "ENST00000369569.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001253852.3"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1345A>C",
"hgvs_p": "p.Arg449Arg",
"transcript": "ENST00000369569.6",
"protein_id": "ENSP00000358582.1",
"transcript_support_level": 1,
"aa_start": 449,
"aa_end": null,
"aa_length": 739,
"cds_start": 1345,
"cds_end": null,
"cds_length": 2220,
"cdna_start": 1427,
"cdna_end": null,
"cdna_length": 3173,
"mane_select": "NM_001253852.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000369569.6"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1345A>C",
"hgvs_p": "p.Arg449Arg",
"transcript": "ENST00000256658.8",
"protein_id": "ENSP00000256658.4",
"transcript_support_level": 1,
"aa_start": 449,
"aa_end": null,
"aa_length": 739,
"cds_start": 1345,
"cds_end": null,
"cds_length": 2220,
"cdna_start": 1550,
"cdna_end": null,
"cdna_length": 2742,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000256658.8"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1471A>C",
"hgvs_p": "p.Arg491Arg",
"transcript": "ENST00000863127.1",
"protein_id": "ENSP00000533186.1",
"transcript_support_level": null,
"aa_start": 491,
"aa_end": null,
"aa_length": 781,
"cds_start": 1471,
"cds_end": null,
"cds_length": 2346,
"cdna_start": 1718,
"cdna_end": null,
"cdna_length": 2602,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000863127.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1345A>C",
"hgvs_p": "p.Arg449Arg",
"transcript": "NM_001438373.1",
"protein_id": "NP_001425302.1",
"transcript_support_level": null,
"aa_start": 449,
"aa_end": null,
"aa_length": 739,
"cds_start": 1345,
"cds_end": null,
"cds_length": 2220,
"cdna_start": 1529,
"cdna_end": null,
"cdna_length": 3275,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001438373.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1345A>C",
"hgvs_p": "p.Arg449Arg",
"transcript": "NM_006594.5",
"protein_id": "NP_006585.2",
"transcript_support_level": null,
"aa_start": 449,
"aa_end": null,
"aa_length": 739,
"cds_start": 1345,
"cds_end": null,
"cds_length": 2220,
"cdna_start": 1508,
"cdna_end": null,
"cdna_length": 3254,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_006594.5"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1345A>C",
"hgvs_p": "p.Arg449Arg",
"transcript": "ENST00000369571.3",
"protein_id": "ENSP00000358584.3",
"transcript_support_level": 3,
"aa_start": 449,
"aa_end": null,
"aa_length": 739,
"cds_start": 1345,
"cds_end": null,
"cds_length": 2220,
"cdna_start": 1538,
"cdna_end": null,
"cdna_length": 2730,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000369571.3"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1345A>C",
"hgvs_p": "p.Arg449Arg",
"transcript": "ENST00000713590.1",
"protein_id": "ENSP00000518886.1",
"transcript_support_level": null,
"aa_start": 449,
"aa_end": null,
"aa_length": 739,
"cds_start": 1345,
"cds_end": null,
"cds_length": 2220,
"cdna_start": 1551,
"cdna_end": null,
"cdna_length": 2743,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000713590.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1345A>C",
"hgvs_p": "p.Arg449Arg",
"transcript": "ENST00000713645.1",
"protein_id": "ENSP00000518947.1",
"transcript_support_level": null,
"aa_start": 449,
"aa_end": null,
"aa_length": 739,
"cds_start": 1345,
"cds_end": null,
"cds_length": 2220,
"cdna_start": 1457,
"cdna_end": null,
"cdna_length": 3203,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000713645.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1345A>C",
"hgvs_p": "p.Arg449Arg",
"transcript": "ENST00000935535.1",
"protein_id": "ENSP00000605594.1",
"transcript_support_level": null,
"aa_start": 449,
"aa_end": null,
"aa_length": 739,
"cds_start": 1345,
"cds_end": null,
"cds_length": 2220,
"cdna_start": 1859,
"cdna_end": null,
"cdna_length": 2736,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935535.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1345A>C",
"hgvs_p": "p.Arg449Arg",
"transcript": "ENST00000935541.1",
"protein_id": "ENSP00000605600.1",
"transcript_support_level": null,
"aa_start": 449,
"aa_end": null,
"aa_length": 693,
"cds_start": 1345,
"cds_end": null,
"cds_length": 2082,
"cdna_start": 1452,
"cdna_end": null,
"cdna_length": 2189,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935541.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1120A>C",
"hgvs_p": "p.Arg374Arg",
"transcript": "NM_001437822.1",
"protein_id": "NP_001424751.1",
"transcript_support_level": null,
"aa_start": 374,
"aa_end": null,
"aa_length": 664,
"cds_start": 1120,
"cds_end": null,
"cds_length": 1995,
"cdna_start": 1283,
"cdna_end": null,
"cdna_length": 3029,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001437822.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1120A>C",
"hgvs_p": "p.Arg374Arg",
"transcript": "ENST00000369564.6",
"protein_id": "ENSP00000358577.2",
"transcript_support_level": 5,
"aa_start": 374,
"aa_end": null,
"aa_length": 664,
"cds_start": 1120,
"cds_end": null,
"cds_length": 1995,
"cdna_start": 1456,
"cdna_end": null,
"cdna_length": 2648,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000369564.6"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1120A>C",
"hgvs_p": "p.Arg374Arg",
"transcript": "ENST00000935536.1",
"protein_id": "ENSP00000605595.1",
"transcript_support_level": null,
"aa_start": 374,
"aa_end": null,
"aa_length": 664,
"cds_start": 1120,
"cds_end": null,
"cds_length": 1995,
"cdna_start": 1250,
"cdna_end": null,
"cdna_length": 2132,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935536.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1120A>C",
"hgvs_p": "p.Arg374Arg",
"transcript": "ENST00000935543.1",
"protein_id": "ENSP00000605602.1",
"transcript_support_level": null,
"aa_start": 374,
"aa_end": null,
"aa_length": 664,
"cds_start": 1120,
"cds_end": null,
"cds_length": 1995,
"cdna_start": 1328,
"cdna_end": null,
"cdna_length": 2212,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935543.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1066A>C",
"hgvs_p": "p.Arg356Arg",
"transcript": "NM_001438374.1",
"protein_id": "NP_001425303.1",
"transcript_support_level": null,
"aa_start": 356,
"aa_end": null,
"aa_length": 646,
"cds_start": 1066,
"cds_end": null,
"cds_length": 1941,
"cdna_start": 1229,
"cdna_end": null,
"cdna_length": 2975,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001438374.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1066A>C",
"hgvs_p": "p.Arg356Arg",
"transcript": "ENST00000863120.1",
"protein_id": "ENSP00000533179.1",
"transcript_support_level": null,
"aa_start": 356,
"aa_end": null,
"aa_length": 646,
"cds_start": 1066,
"cds_end": null,
"cds_length": 1941,
"cdna_start": 1436,
"cdna_end": null,
"cdna_length": 3172,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000863120.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1066A>C",
"hgvs_p": "p.Arg356Arg",
"transcript": "ENST00000863129.1",
"protein_id": "ENSP00000533188.1",
"transcript_support_level": null,
"aa_start": 356,
"aa_end": null,
"aa_length": 646,
"cds_start": 1066,
"cds_end": null,
"cds_length": 1941,
"cdna_start": 1230,
"cdna_end": null,
"cdna_length": 2109,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000863129.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1345A>C",
"hgvs_p": "p.Arg449Arg",
"transcript": "ENST00000863121.1",
"protein_id": "ENSP00000533180.1",
"transcript_support_level": null,
"aa_start": 449,
"aa_end": null,
"aa_length": 645,
"cds_start": 1345,
"cds_end": null,
"cds_length": 1938,
"cdna_start": 1580,
"cdna_end": null,
"cdna_length": 2871,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000863121.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1345A>C",
"hgvs_p": "p.Arg449Arg",
"transcript": "ENST00000863123.1",
"protein_id": "ENSP00000533182.1",
"transcript_support_level": null,
"aa_start": 449,
"aa_end": null,
"aa_length": 645,
"cds_start": 1345,
"cds_end": null,
"cds_length": 1938,
"cdna_start": 1556,
"cdna_end": null,
"cdna_length": 2158,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000863123.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1345A>C",
"hgvs_p": "p.Arg449Arg",
"transcript": "ENST00000863128.1",
"protein_id": "ENSP00000533187.1",
"transcript_support_level": null,
"aa_start": 449,
"aa_end": null,
"aa_length": 645,
"cds_start": 1345,
"cds_end": null,
"cds_length": 1938,
"cdna_start": 1512,
"cdna_end": null,
"cdna_length": 2113,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000863128.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AP4B1",
"gene_hgnc_id": 572,
"hgvs_c": "c.1048A>C",
"hgvs_p": "p.Arg350Arg",
"transcript": "NM_001253853.3",
"protein_id": "NP_001240782.1",
"transcript_support_level": null,
"aa_start": 350,
"aa_end": null,
"aa_length": 640,
"cds_start": 1048,
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{
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}
],
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}