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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-147242803-C-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=147242803&ref=C&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "1",
      "pos": 147242803,
      "ref": "C",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_004284.6",
      "consequences": [
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "NM_004284.6",
          "protein_id": "NP_004275.4",
          "transcript_support_level": null,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 897,
          "cds_start": 100,
          "cds_end": null,
          "cds_length": 2694,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000369258.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_004284.6"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000369258.8",
          "protein_id": "ENSP00000358262.4",
          "transcript_support_level": 1,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 897,
          "cds_start": 100,
          "cds_end": null,
          "cds_length": 2694,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_004284.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000369258.8"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000369259.4",
          "protein_id": "ENSP00000358263.3",
          "transcript_support_level": 1,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 693,
          "cds_start": 100,
          "cds_end": null,
          "cds_length": 2082,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000369259.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "n.100C>G",
          "hgvs_p": null,
          "transcript": "ENST00000467213.5",
          "protein_id": "ENSP00000477985.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000467213.5"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000866233.1",
          "protein_id": "ENSP00000536292.1",
          "transcript_support_level": null,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 927,
          "cds_start": 100,
          "cds_end": null,
          "cds_length": 2784,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000866233.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000917457.1",
          "protein_id": "ENSP00000587516.1",
          "transcript_support_level": null,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 921,
          "cds_start": 100,
          "cds_end": null,
          "cds_length": 2766,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000917457.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000866229.1",
          "protein_id": "ENSP00000536288.1",
          "transcript_support_level": null,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 910,
          "cds_start": 100,
          "cds_end": null,
          "cds_length": 2733,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000866229.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000866232.1",
          "protein_id": "ENSP00000536291.1",
          "transcript_support_level": null,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 900,
          "cds_start": 100,
          "cds_end": null,
          "cds_length": 2703,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000866232.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000866231.1",
          "protein_id": "ENSP00000536290.1",
          "transcript_support_level": null,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 889,
          "cds_start": 100,
          "cds_end": null,
          "cds_length": 2670,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000866231.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000917448.1",
          "protein_id": "ENSP00000587507.1",
          "transcript_support_level": null,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 887,
          "cds_start": 100,
          "cds_end": null,
          "cds_length": 2664,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000917448.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000866234.1",
          "protein_id": "ENSP00000536293.1",
          "transcript_support_level": null,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 882,
          "cds_start": 100,
          "cds_end": null,
          "cds_length": 2649,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000866234.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000949387.1",
          "protein_id": "ENSP00000619446.1",
          "transcript_support_level": null,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 870,
          "cds_start": 100,
          "cds_end": null,
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          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000949387.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000866236.1",
          "protein_id": "ENSP00000536295.1",
          "transcript_support_level": null,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 860,
          "cds_start": 100,
          "cds_end": null,
          "cds_length": 2583,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000866236.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000917454.1",
          "protein_id": "ENSP00000587513.1",
          "transcript_support_level": null,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 850,
          "cds_start": 100,
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          "cds_length": 2553,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000917454.1"
        },
        {
          "aa_ref": "Q",
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          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
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          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000917452.1",
          "protein_id": "ENSP00000587511.1",
          "transcript_support_level": null,
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          "aa_length": 840,
          "cds_start": 100,
          "cds_end": null,
          "cds_length": 2523,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000917452.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000917456.1",
          "protein_id": "ENSP00000587515.1",
          "transcript_support_level": null,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 834,
          "cds_start": 100,
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          "cds_length": 2505,
          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000917456.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000949390.1",
          "protein_id": "ENSP00000619449.1",
          "transcript_support_level": null,
          "aa_start": 34,
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          "aa_length": 806,
          "cds_start": 100,
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          "cdna_length": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "Q",
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          "protein_coding": true,
          "strand": true,
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          ],
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          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000866230.1",
          "protein_id": "ENSP00000536289.1",
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          "cds_start": 100,
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          "cds_length": 2412,
          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000866230.1"
        },
        {
          "aa_ref": "Q",
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          "protein_coding": true,
          "strand": true,
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          ],
          "exon_rank": 1,
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          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000650714.1",
          "protein_id": "ENSP00000499169.1",
          "transcript_support_level": null,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 792,
          "cds_start": 100,
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          "cds_length": 2379,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000650714.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CHD1L",
          "gene_hgnc_id": 1916,
          "hgvs_c": "c.100C>G",
          "hgvs_p": "p.Gln34Glu",
          "transcript": "ENST00000917451.1",
          "protein_id": "ENSP00000587510.1",
          "transcript_support_level": null,
          "aa_start": 34,
          "aa_end": null,
          "aa_length": 785,
          "cds_start": 100,
          "cds_end": null,
          "cds_length": 2358,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000917451.1"
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      "gnomad_mito_homoplasmic": null,
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      "computational_score_selected": 0.12891680002212524,
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      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "revel_prediction": "Benign",
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      "bayesdelnoaf_score": -0.35,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 0.879,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
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      "acmg_score": 0,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4_Moderate",
      "acmg_by_gene": [
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          "score": 0,
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            "BP4_Moderate"
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          "verdict": "Uncertain_significance",
          "transcript": "NM_004284.6",
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        {
          "score": 0,
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            "BP4_Moderate"
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          "verdict": "Uncertain_significance",
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        {
          "score": 0,
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            "BP4_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000650785.1",
          "gene_symbol": "ENSG00000237188",
          "hgnc_id": null,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.361-9820C>G",
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      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}