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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-14962293-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=14962293&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "1",
      "pos": 14962293,
      "ref": "T",
      "alt": "C",
      "effect": "intron_variant",
      "transcript": "ENST00000376030.7",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "KAZN",
          "gene_hgnc_id": 29173,
          "hgvs_c": "c.418+1418T>C",
          "hgvs_p": null,
          "transcript": "NM_201628.3",
          "protein_id": "NP_963922.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 775,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2328,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6049,
          "mane_select": "ENST00000376030.7",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "KAZN",
          "gene_hgnc_id": 29173,
          "hgvs_c": "c.418+1418T>C",
          "hgvs_p": null,
          "transcript": "ENST00000376030.7",
          "protein_id": "ENSP00000365198.2",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 775,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2328,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6049,
          "mane_select": "NM_201628.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "KAZN",
          "gene_hgnc_id": 29173,
          "hgvs_c": "c.418+1418T>C",
          "hgvs_p": null,
          "transcript": "ENST00000503743.5",
          "protein_id": "ENSP00000426015.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 421,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1266,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1475,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "KAZN",
          "gene_hgnc_id": 29173,
          "hgvs_c": "c.400+1418T>C",
          "hgvs_p": null,
          "transcript": "ENST00000361144.9",
          "protein_id": "ENSP00000354727.5",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 415,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1248,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3838,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "KAZN",
          "gene_hgnc_id": 29173,
          "hgvs_c": "c.136+1418T>C",
          "hgvs_p": null,
          "transcript": "ENST00000400797.3",
          "protein_id": "ENSP00000383601.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 327,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 984,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1295,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "KAZN",
          "gene_hgnc_id": 29173,
          "hgvs_c": "c.136+1418T>C",
          "hgvs_p": null,
          "transcript": "ENST00000400798.6",
          "protein_id": "ENSP00000383602.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 327,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 984,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3643,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "KAZN",
          "gene_hgnc_id": 29173,
          "hgvs_c": "c.682+1418T>C",
          "hgvs_p": null,
          "transcript": "ENST00000636203.1",
          "protein_id": "ENSP00000490958.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 863,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2592,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6874,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "KAZN",
          "gene_hgnc_id": 29173,
          "hgvs_c": "c.418+1418T>C",
          "hgvs_p": null,
          "transcript": "NM_001437721.1",
          "protein_id": "NP_001424650.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 421,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1266,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3862,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "KAZN",
          "gene_hgnc_id": 29173,
          "hgvs_c": "c.418+1418T>C",
          "hgvs_p": null,
          "transcript": "NM_015209.3",
          "protein_id": "NP_056024.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 421,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1266,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3934,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "KAZN",
          "gene_hgnc_id": 29173,
          "hgvs_c": "c.400+1418T>C",
          "hgvs_p": null,
          "transcript": "NM_001018000.4",
          "protein_id": "NP_001018000.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 415,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1248,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3814,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "KAZN",
          "gene_hgnc_id": 29173,
          "hgvs_c": "c.391+1418T>C",
          "hgvs_p": null,
          "transcript": "NM_001370229.2",
          "protein_id": "NP_001357158.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 412,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1239,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3992,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "KAZN",
          "gene_hgnc_id": 29173,
          "hgvs_c": "c.136+1418T>C",
          "hgvs_p": null,
          "transcript": "NM_001017999.3",
          "protein_id": "NP_001017999.1",
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          "cdna_start": null,
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        {
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          "strand": true,
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          "exon_rank": null,
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          "exon_count": 8,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "KAZN",
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          "hgvs_c": "c.136+1418T>C",
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          "transcript": "NM_001018001.3",
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          "cds_start": -4,
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          "mane_select": null,
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        {
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          "intron_rank": 3,
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          "gene_symbol": "KAZN",
          "gene_hgnc_id": 29173,
          "hgvs_c": "c.136+1418T>C",
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          "transcript": "NM_001370231.2",
          "protein_id": "NP_001357160.2",
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          "aa_length": 327,
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          "mane_select": null,
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        {
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          "intron_rank": 2,
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          "gene_symbol": "KAZN",
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          "hgvs_c": "c.223+1418T>C",
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        {
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          "gene_symbol": "KAZN",
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          "hgvs_c": "c.136+1418T>C",
          "hgvs_p": null,
          "transcript": "ENST00000376028.8",
          "protein_id": "ENSP00000365196.4",
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          "cds_start": -4,
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        },
        {
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          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "KAZN",
          "gene_hgnc_id": 29173,
          "hgvs_c": "n.712+1418T>C",
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          "transcript": "ENST00000491547.1",
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        {
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          ],
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          "exon_count": 16,
          "intron_rank": 4,
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          "gene_symbol": "KAZN",
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          "hgvs_c": "c.712+1418T>C",
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          "gene_symbol": "KAZN",
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          "gene_symbol": "KAZN",
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        {
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          "canonical": false,
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          ],
          "exon_rank": null,
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          "exon_count": 17,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "KAZN",
          "gene_hgnc_id": 29173,
          "hgvs_c": "c.712+1418T>C",
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          "transcript": "XM_005245795.6",
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}