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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-150093597-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=150093597&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 150093597,
"ref": "G",
"alt": "A",
"effect": "missense_variant",
"transcript": "ENST00000644510.2",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1442G>A",
"hgvs_p": "p.Arg481Lys",
"transcript": "NM_007259.5",
"protein_id": "NP_009190.2",
"transcript_support_level": null,
"aa_start": 481,
"aa_end": null,
"aa_length": 570,
"cds_start": 1442,
"cds_end": null,
"cds_length": 1713,
"cdna_start": 1524,
"cdna_end": null,
"cdna_length": 2328,
"mane_select": "ENST00000644510.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1442G>A",
"hgvs_p": "p.Arg481Lys",
"transcript": "ENST00000644510.2",
"protein_id": "ENSP00000495563.1",
"transcript_support_level": null,
"aa_start": 481,
"aa_end": null,
"aa_length": 570,
"cds_start": 1442,
"cds_end": null,
"cds_length": 1713,
"cdna_start": 1524,
"cdna_end": null,
"cdna_length": 2328,
"mane_select": "NM_007259.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1442G>A",
"hgvs_p": "p.Arg481Lys",
"transcript": "ENST00000698584.1",
"protein_id": "ENSP00000513813.1",
"transcript_support_level": null,
"aa_start": 481,
"aa_end": null,
"aa_length": 651,
"cds_start": 1442,
"cds_end": null,
"cds_length": 1956,
"cdna_start": 1564,
"cdna_end": null,
"cdna_length": 2449,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1442G>A",
"hgvs_p": "p.Arg481Lys",
"transcript": "ENST00000644526.2",
"protein_id": "ENSP00000494363.1",
"transcript_support_level": null,
"aa_start": 481,
"aa_end": null,
"aa_length": 643,
"cds_start": 1442,
"cds_end": null,
"cds_length": 1932,
"cdna_start": 1564,
"cdna_end": null,
"cdna_length": 2462,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1442G>A",
"hgvs_p": "p.Arg481Lys",
"transcript": "ENST00000698580.1",
"protein_id": "ENSP00000513809.1",
"transcript_support_level": null,
"aa_start": 481,
"aa_end": null,
"aa_length": 595,
"cds_start": 1442,
"cds_end": null,
"cds_length": 1788,
"cdna_start": 1564,
"cdna_end": null,
"cdna_length": 2140,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1442G>A",
"hgvs_p": "p.Arg481Lys",
"transcript": "ENST00000698582.1",
"protein_id": "ENSP00000513811.1",
"transcript_support_level": null,
"aa_start": 481,
"aa_end": null,
"aa_length": 582,
"cds_start": 1442,
"cds_end": null,
"cds_length": 1749,
"cdna_start": 1564,
"cdna_end": null,
"cdna_length": 4196,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1478G>A",
"hgvs_p": "p.Arg493Lys",
"transcript": "ENST00000698587.1",
"protein_id": "ENSP00000513816.1",
"transcript_support_level": null,
"aa_start": 493,
"aa_end": null,
"aa_length": 582,
"cds_start": 1478,
"cds_end": null,
"cds_length": 1749,
"cdna_start": 1600,
"cdna_end": null,
"cdna_length": 2398,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1478G>A",
"hgvs_p": "p.Arg493Lys",
"transcript": "ENST00000698598.1",
"protein_id": "ENSP00000513825.1",
"transcript_support_level": null,
"aa_start": 493,
"aa_end": null,
"aa_length": 582,
"cds_start": 1478,
"cds_end": null,
"cds_length": 1749,
"cdna_start": 1532,
"cdna_end": null,
"cdna_length": 2336,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1439G>A",
"hgvs_p": "p.Arg480Lys",
"transcript": "ENST00000698590.1",
"protein_id": "ENSP00000513818.1",
"transcript_support_level": null,
"aa_start": 480,
"aa_end": null,
"aa_length": 569,
"cds_start": 1439,
"cds_end": null,
"cds_length": 1710,
"cdna_start": 1535,
"cdna_end": null,
"cdna_length": 2322,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1442G>A",
"hgvs_p": "p.Arg481Lys",
"transcript": "ENST00000698581.1",
"protein_id": "ENSP00000513810.1",
"transcript_support_level": null,
"aa_start": 481,
"aa_end": null,
"aa_length": 548,
"cds_start": 1442,
"cds_end": null,
"cds_length": 1647,
"cdna_start": 1564,
"cdna_end": null,
"cdna_length": 2022,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1373G>A",
"hgvs_p": "p.Arg458Lys",
"transcript": "ENST00000698532.1",
"protein_id": "ENSP00000513778.1",
"transcript_support_level": null,
"aa_start": 458,
"aa_end": null,
"aa_length": 547,
"cds_start": 1373,
"cds_end": null,
"cds_length": 1644,
"cdna_start": 1455,
"cdna_end": null,
"cdna_length": 2242,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1370G>A",
"hgvs_p": "p.Arg457Lys",
"transcript": "ENST00000419023.4",
"protein_id": "ENSP00000400143.3",
"transcript_support_level": 3,
"aa_start": 457,
"aa_end": null,
"aa_length": 546,
"cds_start": 1370,
"cds_end": null,
"cds_length": 1641,
"cdna_start": 1381,
"cdna_end": null,
"cdna_length": 2168,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1442G>A",
"hgvs_p": "p.Arg481Lys",
"transcript": "ENST00000698578.1",
"protein_id": "ENSP00000513807.1",
"transcript_support_level": null,
"aa_start": 481,
"aa_end": null,
"aa_length": 542,
"cds_start": 1442,
"cds_end": null,
"cds_length": 1629,
"cdna_start": 1564,
"cdna_end": null,
"cdna_length": 3093,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1127G>A",
"hgvs_p": "p.Arg376Lys",
"transcript": "NM_001279353.2",
"protein_id": "NP_001266282.1",
"transcript_support_level": null,
"aa_start": 376,
"aa_end": null,
"aa_length": 538,
"cds_start": 1127,
"cds_end": null,
"cds_length": 1617,
"cdna_start": 1367,
"cdna_end": null,
"cdna_length": 2265,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1127G>A",
"hgvs_p": "p.Arg376Lys",
"transcript": "ENST00000369128.9",
"protein_id": "ENSP00000358124.5",
"transcript_support_level": 2,
"aa_start": 376,
"aa_end": null,
"aa_length": 538,
"cds_start": 1127,
"cds_end": null,
"cds_length": 1617,
"cdna_start": 1367,
"cdna_end": null,
"cdna_length": 2224,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1346G>A",
"hgvs_p": "p.Arg449Lys",
"transcript": "ENST00000698597.1",
"protein_id": "ENSP00000513824.1",
"transcript_support_level": null,
"aa_start": 449,
"aa_end": null,
"aa_length": 538,
"cds_start": 1346,
"cds_end": null,
"cds_length": 1617,
"cdna_start": 1402,
"cdna_end": null,
"cdna_length": 2189,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1334G>A",
"hgvs_p": "p.Arg445Lys",
"transcript": "NM_001279354.2",
"protein_id": "NP_001266283.1",
"transcript_support_level": null,
"aa_start": 445,
"aa_end": null,
"aa_length": 534,
"cds_start": 1334,
"cds_end": null,
"cds_length": 1605,
"cdna_start": 1544,
"cdna_end": null,
"cdna_length": 2348,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1334G>A",
"hgvs_p": "p.Arg445Lys",
"transcript": "ENST00000643970.2",
"protein_id": "ENSP00000495148.1",
"transcript_support_level": null,
"aa_start": 445,
"aa_end": null,
"aa_length": 534,
"cds_start": 1334,
"cds_end": null,
"cds_length": 1605,
"cdna_start": 1677,
"cdna_end": null,
"cdna_length": 2475,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1334G>A",
"hgvs_p": "p.Arg445Lys",
"transcript": "ENST00000698528.1",
"protein_id": "ENSP00000513777.1",
"transcript_support_level": null,
"aa_start": 445,
"aa_end": null,
"aa_length": 534,
"cds_start": 1334,
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"cdna_start": 1497,
"cdna_end": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1331G>A",
"hgvs_p": "p.Arg444Lys",
"transcript": "ENST00000698588.1",
"protein_id": "ENSP00000513817.1",
"transcript_support_level": null,
"aa_start": 444,
"aa_end": null,
"aa_length": 533,
"cds_start": 1331,
"cds_end": null,
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"cdna_start": 1438,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1307G>A",
"hgvs_p": "p.Arg436Lys",
"transcript": "ENST00000698533.1",
"protein_id": "ENSP00000513779.1",
"transcript_support_level": null,
"aa_start": 436,
"aa_end": null,
"aa_length": 525,
"cds_start": 1307,
"cds_end": null,
"cds_length": 1578,
"cdna_start": 1389,
"cdna_end": null,
"cdna_length": 2176,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"hgvs_c": "c.1307G>A",
"hgvs_p": "p.Arg436Lys",
"transcript": "ENST00000698592.1",
"protein_id": "ENSP00000513820.1",
"transcript_support_level": null,
"aa_start": 436,
"aa_end": null,
"aa_length": 525,
"cds_start": 1307,
"cds_end": null,
"cds_length": 1578,
"cdna_start": 1393,
"cdna_end": null,
"cdna_length": 2177,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VPS45",
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},
{
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"canonical": false,
"protein_coding": false,
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"transcript": "ENST00000698591.1",
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},
{
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"protein_coding": false,
"strand": true,
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],
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"gene_symbol": "VPS45",
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"transcript": "ENST00000698593.1",
"protein_id": "ENSP00000513821.1",
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},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
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"gene_symbol": "VPS45",
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"hgvs_c": "n.1493+1188G>A",
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"transcript": "ENST00000698530.1",
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}
],
"gene_symbol": "VPS45",
"gene_hgnc_id": 14579,
"dbsnp": "rs151292369",
"frequency_reference_population": 0.000021068678,
"hom_count_reference_population": 0,
"allele_count_reference_population": 34,
"gnomad_exomes_af": 0.0000102623,
"gnomad_genomes_af": 0.000124915,
"gnomad_exomes_ac": 15,
"gnomad_genomes_ac": 19,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.09154099225997925,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.113,
"revel_prediction": "Benign",
"alphamissense_score": 0.0764,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.53,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 2.316,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -2,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4_Moderate",
"acmg_by_gene": [
{
"score": -2,
"benign_score": 2,
"pathogenic_score": 0,
"criteria": [
"BP4_Moderate"
],
"verdict": "Likely_benign",
"transcript": "ENST00000644510.2",
"gene_symbol": "VPS45",
"hgnc_id": 14579,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1442G>A",
"hgvs_p": "p.Arg481Lys"
}
],
"clinvar_disease": "Congenital neutropenia-myelofibrosis-nephromegaly syndrome",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "Congenital neutropenia-myelofibrosis-nephromegaly syndrome",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}