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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-154234687-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=154234687&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "1",
      "pos": 154234687,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_001375612.1",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "UBAP2L",
          "gene_hgnc_id": 29877,
          "hgvs_c": "c.376C>T",
          "hgvs_p": "p.Arg126Trp",
          "transcript": "NM_014847.4",
          "protein_id": "NP_055662.3",
          "transcript_support_level": null,
          "aa_start": 126,
          "aa_end": null,
          "aa_length": 1087,
          "cds_start": 376,
          "cds_end": null,
          "cds_length": 3264,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000428931.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_014847.4"
        },
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "UBAP2L",
          "gene_hgnc_id": 29877,
          "hgvs_c": "c.376C>T",
          "hgvs_p": "p.Arg126Trp",
          "transcript": "ENST00000428931.6",
          "protein_id": "ENSP00000389445.1",
          "transcript_support_level": 5,
          "aa_start": 126,
          "aa_end": null,
          "aa_length": 1087,
          "cds_start": 376,
          "cds_end": null,
          "cds_length": 3264,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_014847.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000428931.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "UBAP2L",
          "gene_hgnc_id": 29877,
          "hgvs_c": "c.376C>T",
          "hgvs_p": "p.Arg126Trp",
          "transcript": "ENST00000361546.6",
          "protein_id": "ENSP00000355343.2",
          "transcript_support_level": 1,
          "aa_start": 126,
          "aa_end": null,
          "aa_length": 1087,
          "cds_start": 376,
          "cds_end": null,
          "cds_length": 3264,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000361546.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "UBAP2L",
          "gene_hgnc_id": 29877,
          "hgvs_c": "c.376C>T",
          "hgvs_p": "p.Arg126Trp",
          "transcript": "ENST00000343815.10",
          "protein_id": "ENSP00000345308.6",
          "transcript_support_level": 1,
          "aa_start": 126,
          "aa_end": null,
          "aa_length": 983,
          "cds_start": 376,
          "cds_end": null,
          "cds_length": 2952,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000343815.10"
        },
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "UBAP2L",
          "gene_hgnc_id": 29877,
          "hgvs_c": "c.376C>T",
          "hgvs_p": "p.Arg126Trp",
          "transcript": "NM_001375612.1",
          "protein_id": "NP_001362541.1",
          "transcript_support_level": null,
          "aa_start": 126,
          "aa_end": null,
          "aa_length": 1115,
          "cds_start": 376,
          "cds_end": null,
          "cds_length": 3348,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001375612.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "UBAP2L",
          "gene_hgnc_id": 29877,
          "hgvs_c": "c.376C>T",
          "hgvs_p": "p.Arg126Trp",
          "transcript": "ENST00000881857.1",
          "protein_id": "ENSP00000551916.1",
          "transcript_support_level": null,
          "aa_start": 126,
          "aa_end": null,
          "aa_length": 1114,
          "cds_start": 376,
          "cds_end": null,
          "cds_length": 3345,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000881857.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "UBAP2L",
          "gene_hgnc_id": 29877,
          "hgvs_c": "c.376C>T",
          "hgvs_p": "p.Arg126Trp",
          "transcript": "ENST00000881869.1",
          "protein_id": "ENSP00000551928.1",
          "transcript_support_level": null,
          "aa_start": 126,
          "aa_end": null,
          "aa_length": 1114,
          "cds_start": 376,
          "cds_end": null,
          "cds_length": 3345,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000881869.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "UBAP2L",
          "gene_hgnc_id": 29877,
          "hgvs_c": "c.376C>T",
          "hgvs_p": "p.Arg126Trp",
          "transcript": "ENST00000963339.1",
          "protein_id": "ENSP00000633398.1",
          "transcript_support_level": null,
          "aa_start": 126,
          "aa_end": null,
          "aa_length": 1114,
          "cds_start": 376,
          "cds_end": null,
          "cds_length": 3345,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000963339.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "UBAP2L",
          "gene_hgnc_id": 29877,
          "hgvs_c": "c.376C>T",
          "hgvs_p": "p.Arg126Trp",
          "transcript": "NM_001375614.1",
          "protein_id": "NP_001362543.1",
          "transcript_support_level": null,
          "aa_start": 126,
          "aa_end": null,
          "aa_length": 1104,
          "cds_start": 376,
          "cds_end": null,
          "cds_length": 3315,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001375614.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "UBAP2L",
          "gene_hgnc_id": 29877,
          "hgvs_c": "c.376C>T",
          "hgvs_p": "p.Arg126Trp",
          "transcript": "NM_001375615.1",
          "protein_id": "NP_001362544.1",
          "transcript_support_level": null,
          "aa_start": 126,
          "aa_end": null,
          "aa_length": 1103,
          "cds_start": 376,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001375615.1"
        },
        {
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          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 5,
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          "exon_count": 28,
          "intron_rank": null,
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          "gene_symbol": "UBAP2L",
          "gene_hgnc_id": 29877,
          "hgvs_c": "c.376C>T",
          "hgvs_p": "p.Arg126Trp",
          "transcript": "NM_001375616.1",
          "protein_id": "NP_001362545.1",
          "transcript_support_level": null,
          "aa_start": 126,
          "aa_end": null,
          "aa_length": 1103,
          "cds_start": 376,
          "cds_end": null,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "R",
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          "protein_coding": true,
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          "consequences": [
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          "exon_rank": 5,
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          "intron_rank": null,
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          "hgvs_c": "c.376C>T",
          "hgvs_p": "p.Arg126Trp",
          "transcript": "ENST00000881849.1",
          "protein_id": "ENSP00000551908.1",
          "transcript_support_level": null,
          "aa_start": 126,
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          "cds_start": 376,
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          "cdna_start": null,
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          "biotype": "protein_coding",
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        {
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          "strand": true,
          "consequences": [
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          ],
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          "gene_symbol": "UBAP2L",
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          "hgvs_c": "c.376C>T",
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          "transcript": "ENST00000881856.1",
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        {
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          "intron_rank": null,
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          "hgvs_c": "c.376C>T",
          "hgvs_p": "p.Arg126Trp",
          "transcript": "ENST00000916748.1",
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        {
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        {
          "aa_ref": "R",
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          "transcript": "ENST00000881855.1",
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        {
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          "gene_symbol": "UBAP2L",
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          "hgvs_c": "c.376C>T",
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        {
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          ],
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          "gene_symbol": "UBAP2L",
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          "hgvs_p": "p.Arg126Trp",
          "transcript": "ENST00000963340.1",
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      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
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  "message": null
}