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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-154447416-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=154447416&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 154447416,
"ref": "G",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000368485.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "IL6R",
"gene_hgnc_id": 6019,
"hgvs_c": "c.950-709G>A",
"hgvs_p": null,
"transcript": "NM_000565.4",
"protein_id": "NP_000556.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 468,
"cds_start": -4,
"cds_end": null,
"cds_length": 1407,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5764,
"mane_select": "ENST00000368485.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "IL6R",
"gene_hgnc_id": 6019,
"hgvs_c": "c.950-709G>A",
"hgvs_p": null,
"transcript": "ENST00000368485.8",
"protein_id": "ENSP00000357470.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 468,
"cds_start": -4,
"cds_end": null,
"cds_length": 1407,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5764,
"mane_select": "NM_000565.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "IL6R",
"gene_hgnc_id": 6019,
"hgvs_c": "c.950-709G>A",
"hgvs_p": null,
"transcript": "ENST00000344086.8",
"protein_id": "ENSP00000340589.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 365,
"cds_start": -4,
"cds_end": null,
"cds_length": 1098,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3217,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "IL6R",
"gene_hgnc_id": 6019,
"hgvs_c": "c.950-709G>A",
"hgvs_p": null,
"transcript": "NM_001382769.1",
"protein_id": "NP_001369698.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 501,
"cds_start": -4,
"cds_end": null,
"cds_length": 1506,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5863,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "IL6R",
"gene_hgnc_id": 6019,
"hgvs_c": "c.1043-709G>A",
"hgvs_p": null,
"transcript": "NM_001382770.1",
"protein_id": "NP_001369699.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 499,
"cds_start": -4,
"cds_end": null,
"cds_length": 1500,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5857,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "IL6R",
"gene_hgnc_id": 6019,
"hgvs_c": "c.998-709G>A",
"hgvs_p": null,
"transcript": "NM_001382771.1",
"protein_id": "NP_001369700.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 484,
"cds_start": -4,
"cds_end": null,
"cds_length": 1455,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5812,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "IL6R",
"gene_hgnc_id": 6019,
"hgvs_c": "c.944-709G>A",
"hgvs_p": null,
"transcript": "NM_001382772.1",
"protein_id": "NP_001369701.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 466,
"cds_start": -4,
"cds_end": null,
"cds_length": 1401,
"cdna_start": null,
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"cdna_length": 5758,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "IL6R",
"gene_hgnc_id": 6019,
"hgvs_c": "c.998-709G>A",
"hgvs_p": null,
"transcript": "NM_001382773.1",
"protein_id": "NP_001369702.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 381,
"cds_start": -4,
"cds_end": null,
"cds_length": 1146,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5718,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "IL6R",
"gene_hgnc_id": 6019,
"hgvs_c": "c.950-709G>A",
"hgvs_p": null,
"transcript": "NM_181359.3",
"protein_id": "NP_852004.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 365,
"cds_start": -4,
"cds_end": null,
"cds_length": 1098,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5670,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "IL6R",
"gene_hgnc_id": 6019,
"hgvs_c": "c.590-709G>A",
"hgvs_p": null,
"transcript": "NM_001382774.1",
"protein_id": "NP_001369703.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 348,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "IL6R",
"gene_hgnc_id": 6019,
"hgvs_c": "c.764-709G>A",
"hgvs_p": null,
"transcript": "ENST00000476006.5",
"protein_id": "ENSP00000423668.1",
"transcript_support_level": 3,
"aa_start": null,
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"cds_start": -4,
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},
{
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"protein_coding": true,
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],
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"exon_count": 6,
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"gene_symbol": "IL6R",
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"transcript": "ENST00000515190.1",
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},
{
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"strand": true,
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],
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"gene_symbol": "IL6R",
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"transcript": "ENST00000507256.1",
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},
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],
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"gene_symbol": "IL6R",
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},
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],
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},
{
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"strand": true,
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],
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"intron_rank": 6,
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"gene_symbol": "IL6R",
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},
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],
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},
{
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],
"exon_rank": null,
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"intron_rank": 6,
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"gene_symbol": "IL6R",
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"hgvs_c": "c.856-709G>A",
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"transcript": "XM_047419654.1",
"protein_id": "XP_047275610.1",
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},
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],
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"exon_count": 9,
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"gene_symbol": "IL6R",
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},
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],
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},
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],
"exon_rank": null,
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"gene_symbol": "IL6R",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "IL6R",
"gene_hgnc_id": 6019,
"hgvs_c": "c.856-709G>A",
"hgvs_p": null,
"transcript": "XM_047419657.1",
"protein_id": "XP_047275613.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
}
],
"gene_symbol": "IL6R",
"gene_hgnc_id": 6019,
"dbsnp": "rs12730935",
"frequency_reference_population": 0.27817953,
"hom_count_reference_population": 5191,
"allele_count_reference_population": 28697,
"gnomad_exomes_af": null,
"gnomad_genomes_af": 0.27818,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": 28697,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": 5191,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -1,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -1,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.281,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -12,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BA1",
"acmg_by_gene": [
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000368485.8",
"gene_symbol": "IL6R",
"hgnc_id": 6019,
"effects": [
"intron_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.950-709G>A",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}