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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-154617152-A-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=154617152&ref=A&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "1",
      "pos": 154617152,
      "ref": "A",
      "alt": "C",
      "effect": "intron_variant",
      "transcript": "NM_001365045.1",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ADAR",
          "gene_hgnc_id": 225,
          "hgvs_c": "c.-871+10703T>G",
          "hgvs_p": null,
          "transcript": "ENST00000368471.8",
          "protein_id": "ENSP00000357456.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 931,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2796,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000368471.8"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ADAR",
          "gene_hgnc_id": 225,
          "hgvs_c": "c.45+10802T>G",
          "hgvs_p": null,
          "transcript": "ENST00000649724.2",
          "protein_id": "ENSP00000497932.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1236,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3711,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000649724.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ADAR",
          "gene_hgnc_id": 225,
          "hgvs_c": "c.42+10802T>G",
          "hgvs_p": null,
          "transcript": "NM_001365045.1",
          "protein_id": "NP_001351974.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1235,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3708,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001365045.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ADAR",
          "gene_hgnc_id": 225,
          "hgvs_c": "c.45+10802T>G",
          "hgvs_p": null,
          "transcript": "ENST00000680270.2",
          "protein_id": "ENSP00000505532.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1187,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3564,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000680270.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ADAR",
          "gene_hgnc_id": 225,
          "hgvs_c": "c.45+10802T>G",
          "hgvs_p": null,
          "transcript": "ENST00000681056.2",
          "protein_id": "ENSP00000506234.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1110,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3333,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000681056.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ADAR",
          "gene_hgnc_id": 225,
          "hgvs_c": "c.-871+10703T>G",
          "hgvs_p": null,
          "transcript": "NM_001025107.3",
          "protein_id": "NP_001020278.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 931,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2796,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001025107.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ADAR",
          "gene_hgnc_id": 225,
          "hgvs_c": "c.-735+10802T>G",
          "hgvs_p": null,
          "transcript": "NM_001365046.1",
          "protein_id": "NP_001351975.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 931,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2796,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001365046.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ADAR",
          "gene_hgnc_id": 225,
          "hgvs_c": "c.-735+10284T>G",
          "hgvs_p": null,
          "transcript": "ENST00000471068.3",
          "protein_id": "ENSP00000518935.1",
          "transcript_support_level": 4,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 931,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2796,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000471068.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ADAR",
          "gene_hgnc_id": 225,
          "hgvs_c": "c.-735+10703T>G",
          "hgvs_p": null,
          "transcript": "ENST00000494866.2",
          "protein_id": "ENSP00000518936.1",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 931,
          "cds_start": null,
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          "cds_length": 2796,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000494866.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ADAR",
          "gene_hgnc_id": 225,
          "hgvs_c": "c.-871+10284T>G",
          "hgvs_p": null,
          "transcript": "ENST00000648311.1",
          "protein_id": "ENSP00000498137.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 931,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2796,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 16,
          "intron_rank": 2,
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          "gene_symbol": "ADAR",
          "gene_hgnc_id": 225,
          "hgvs_c": "c.-871+7911T>G",
          "hgvs_p": null,
          "transcript": "ENST00000649022.2",
          "protein_id": "ENSP00000496896.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 931,
          "cds_start": null,
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          "cds_length": 2796,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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        {
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          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          "exon_count": 16,
          "intron_rank": 1,
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          "gene_symbol": "ADAR",
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          "hgvs_c": "c.-735+10703T>G",
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          "transcript": "ENST00000681683.1",
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        {
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          "gene_symbol": "ADAR",
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          "hgvs_c": "c.-871+8769T>G",
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          "transcript": "ENST00000713632.1",
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        {
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          "gene_symbol": "ADAR",
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          "hgvs_c": "c.-871+10703T>G",
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        {
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          "gene_symbol": "ADAR",
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          "hgvs_c": "c.-871+10703T>G",
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        {
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        {
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          "gene_symbol": "ADAR",
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          "hgvs_c": "c.-871+10703T>G",
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          "transcript": "XM_011509061.3",
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
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      "custom_annotations": null
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  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.