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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-155197098-C-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=155197098&ref=C&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "1",
      "pos": 155197098,
      "ref": "C",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_001407490.1",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2615G>C",
          "hgvs_p": "p.Arg872Pro",
          "transcript": "NM_007112.5",
          "protein_id": "NP_009043.1",
          "transcript_support_level": null,
          "aa_start": 872,
          "aa_end": null,
          "aa_length": 956,
          "cds_start": 2615,
          "cds_end": null,
          "cds_length": 2871,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000368378.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_007112.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2615G>C",
          "hgvs_p": "p.Arg872Pro",
          "transcript": "ENST00000368378.7",
          "protein_id": "ENSP00000357362.3",
          "transcript_support_level": 1,
          "aa_start": 872,
          "aa_end": null,
          "aa_length": 956,
          "cds_start": 2615,
          "cds_end": null,
          "cds_length": 2871,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_007112.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000368378.7"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2588G>C",
          "hgvs_p": "p.Arg863Pro",
          "transcript": "ENST00000541576.5",
          "protein_id": "ENSP00000444792.2",
          "transcript_support_level": 1,
          "aa_start": 863,
          "aa_end": null,
          "aa_length": 947,
          "cds_start": 2588,
          "cds_end": null,
          "cds_length": 2844,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000541576.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.1202G>C",
          "hgvs_p": "p.Arg401Pro",
          "transcript": "ENST00000541990.5",
          "protein_id": "ENSP00000437353.1",
          "transcript_support_level": 1,
          "aa_start": 401,
          "aa_end": null,
          "aa_length": 485,
          "cds_start": 1202,
          "cds_end": null,
          "cds_length": 1458,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000541990.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2786G>C",
          "hgvs_p": "p.Arg929Pro",
          "transcript": "NM_001407490.1",
          "protein_id": "NP_001394419.1",
          "transcript_support_level": null,
          "aa_start": 929,
          "aa_end": null,
          "aa_length": 1013,
          "cds_start": 2786,
          "cds_end": null,
          "cds_length": 3042,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407490.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2624G>C",
          "hgvs_p": "p.Arg875Pro",
          "transcript": "NM_001407487.1",
          "protein_id": "NP_001394416.1",
          "transcript_support_level": null,
          "aa_start": 875,
          "aa_end": null,
          "aa_length": 959,
          "cds_start": 2624,
          "cds_end": null,
          "cds_length": 2880,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407487.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2624G>C",
          "hgvs_p": "p.Arg875Pro",
          "transcript": "ENST00000902275.1",
          "protein_id": "ENSP00000572334.1",
          "transcript_support_level": null,
          "aa_start": 875,
          "aa_end": null,
          "aa_length": 959,
          "cds_start": 2624,
          "cds_end": null,
          "cds_length": 2880,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000902275.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2615G>C",
          "hgvs_p": "p.Arg872Pro",
          "transcript": "ENST00000902272.1",
          "protein_id": "ENSP00000572331.1",
          "transcript_support_level": null,
          "aa_start": 872,
          "aa_end": null,
          "aa_length": 954,
          "cds_start": 2615,
          "cds_end": null,
          "cds_length": 2865,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000902272.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2588G>C",
          "hgvs_p": "p.Arg863Pro",
          "transcript": "NM_001252607.2",
          "protein_id": "NP_001239536.1",
          "transcript_support_level": null,
          "aa_start": 863,
          "aa_end": null,
          "aa_length": 947,
          "cds_start": 2588,
          "cds_end": null,
          "cds_length": 2844,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001252607.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2525G>C",
          "hgvs_p": "p.Arg842Pro",
          "transcript": "NM_001407554.1",
          "protein_id": "NP_001394483.1",
          "transcript_support_level": null,
          "aa_start": 842,
          "aa_end": null,
          "aa_length": 926,
          "cds_start": 2525,
          "cds_end": null,
          "cds_length": 2781,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407554.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2522G>C",
          "hgvs_p": "p.Arg841Pro",
          "transcript": "ENST00000960680.1",
          "protein_id": "ENSP00000630739.1",
          "transcript_support_level": null,
          "aa_start": 841,
          "aa_end": null,
          "aa_length": 925,
          "cds_start": 2522,
          "cds_end": null,
          "cds_length": 2778,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960680.1"
        },
        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2504G>C",
          "hgvs_p": "p.Arg835Pro",
          "transcript": "NM_001407555.1",
          "protein_id": "NP_001394484.1",
          "transcript_support_level": null,
          "aa_start": 835,
          "aa_end": null,
          "aa_length": 919,
          "cds_start": 2504,
          "cds_end": null,
          "cds_length": 2760,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407555.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
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          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2504G>C",
          "hgvs_p": "p.Arg835Pro",
          "transcript": "ENST00000902273.1",
          "protein_id": "ENSP00000572332.1",
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          "cds_start": 2504,
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000902273.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2501G>C",
          "hgvs_p": "p.Arg834Pro",
          "transcript": "NM_001407556.1",
          "protein_id": "NP_001394485.1",
          "transcript_support_level": null,
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          "aa_length": 918,
          "cds_start": 2501,
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        },
        {
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          ],
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          "intron_rank": null,
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          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2501G>C",
          "hgvs_p": "p.Arg834Pro",
          "transcript": "NM_001407557.1",
          "protein_id": "NP_001394486.1",
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          "aa_start": 834,
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          "cds_start": 2501,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001407557.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
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          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2615G>C",
          "hgvs_p": "p.Arg872Pro",
          "transcript": "NM_001407488.1",
          "protein_id": "NP_001394417.1",
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          "aa_start": 872,
          "aa_end": null,
          "aa_length": 894,
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          "biotype": "protein_coding",
          "feature": "NM_001407488.1"
        },
        {
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2396G>C",
          "hgvs_p": "p.Arg799Pro",
          "transcript": "ENST00000960681.1",
          "protein_id": "ENSP00000630740.1",
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        {
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          ],
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          "intron_rank": null,
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          "gene_symbol": "THBS3",
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          "hgvs_c": "c.2390G>C",
          "hgvs_p": "p.Arg797Pro",
          "transcript": "NM_001407558.1",
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          "biotype": "protein_coding",
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        {
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          "exon_count": 21,
          "intron_rank": null,
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          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2297G>C",
          "hgvs_p": "p.Arg766Pro",
          "transcript": "ENST00000960679.1",
          "protein_id": "ENSP00000630738.1",
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          "cds_start": 2297,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000960679.1"
        },
        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2276G>C",
          "hgvs_p": "p.Arg759Pro",
          "transcript": "ENST00000902274.1",
          "protein_id": "ENSP00000572333.1",
          "transcript_support_level": null,
          "aa_start": 759,
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          "cds_start": 2276,
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          "cdna_start": null,
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      "allele_count_reference_population": 1,
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      "computational_score_selected": 0.7964317798614502,
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      "bayesdelnoaf_score": 0.07,
      "bayesdelnoaf_prediction": "Uncertain_significance",
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      "phylop100way_prediction": "Benign",
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      "acmg_score": 3,
      "acmg_classification": "Uncertain_significance",
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      "acmg_by_gene": [
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          "verdict": "Uncertain_significance",
          "transcript": "NM_001407490.1",
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        {
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          "verdict": "Uncertain_significance",
          "transcript": "ENST00000454348.2",
          "gene_symbol": "THBS3-AS1",
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          "effects": [
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          "inheritance_mode": "",
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      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
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  ],
  "message": null
}