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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-155198167-C-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=155198167&ref=C&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "1",
      "pos": 155198167,
      "ref": "C",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_001407490.1",
      "consequences": [
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2128G>C",
          "hgvs_p": "p.Asp710His",
          "transcript": "NM_007112.5",
          "protein_id": "NP_009043.1",
          "transcript_support_level": null,
          "aa_start": 710,
          "aa_end": null,
          "aa_length": 956,
          "cds_start": 2128,
          "cds_end": null,
          "cds_length": 2871,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000368378.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_007112.5"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2128G>C",
          "hgvs_p": "p.Asp710His",
          "transcript": "ENST00000368378.7",
          "protein_id": "ENSP00000357362.3",
          "transcript_support_level": 1,
          "aa_start": 710,
          "aa_end": null,
          "aa_length": 956,
          "cds_start": 2128,
          "cds_end": null,
          "cds_length": 2871,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_007112.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000368378.7"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2101G>C",
          "hgvs_p": "p.Asp701His",
          "transcript": "ENST00000541576.5",
          "protein_id": "ENSP00000444792.2",
          "transcript_support_level": 1,
          "aa_start": 701,
          "aa_end": null,
          "aa_length": 947,
          "cds_start": 2101,
          "cds_end": null,
          "cds_length": 2844,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000541576.5"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.715G>C",
          "hgvs_p": "p.Asp239His",
          "transcript": "ENST00000541990.5",
          "protein_id": "ENSP00000437353.1",
          "transcript_support_level": 1,
          "aa_start": 239,
          "aa_end": null,
          "aa_length": 485,
          "cds_start": 715,
          "cds_end": null,
          "cds_length": 1458,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000541990.5"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2299G>C",
          "hgvs_p": "p.Asp767His",
          "transcript": "NM_001407490.1",
          "protein_id": "NP_001394419.1",
          "transcript_support_level": null,
          "aa_start": 767,
          "aa_end": null,
          "aa_length": 1013,
          "cds_start": 2299,
          "cds_end": null,
          "cds_length": 3042,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407490.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2137G>C",
          "hgvs_p": "p.Asp713His",
          "transcript": "NM_001407487.1",
          "protein_id": "NP_001394416.1",
          "transcript_support_level": null,
          "aa_start": 713,
          "aa_end": null,
          "aa_length": 959,
          "cds_start": 2137,
          "cds_end": null,
          "cds_length": 2880,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407487.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2137G>C",
          "hgvs_p": "p.Asp713His",
          "transcript": "ENST00000902275.1",
          "protein_id": "ENSP00000572334.1",
          "transcript_support_level": null,
          "aa_start": 713,
          "aa_end": null,
          "aa_length": 959,
          "cds_start": 2137,
          "cds_end": null,
          "cds_length": 2880,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000902275.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2128G>C",
          "hgvs_p": "p.Asp710His",
          "transcript": "ENST00000902272.1",
          "protein_id": "ENSP00000572331.1",
          "transcript_support_level": null,
          "aa_start": 710,
          "aa_end": null,
          "aa_length": 954,
          "cds_start": 2128,
          "cds_end": null,
          "cds_length": 2865,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000902272.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2101G>C",
          "hgvs_p": "p.Asp701His",
          "transcript": "NM_001252607.2",
          "protein_id": "NP_001239536.1",
          "transcript_support_level": null,
          "aa_start": 701,
          "aa_end": null,
          "aa_length": 947,
          "cds_start": 2101,
          "cds_end": null,
          "cds_length": 2844,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001252607.2"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2038G>C",
          "hgvs_p": "p.Asp680His",
          "transcript": "NM_001407554.1",
          "protein_id": "NP_001394483.1",
          "transcript_support_level": null,
          "aa_start": 680,
          "aa_end": null,
          "aa_length": 926,
          "cds_start": 2038,
          "cds_end": null,
          "cds_length": 2781,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407554.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2128G>C",
          "hgvs_p": "p.Asp710His",
          "transcript": "ENST00000960680.1",
          "protein_id": "ENSP00000630739.1",
          "transcript_support_level": null,
          "aa_start": 710,
          "aa_end": null,
          "aa_length": 925,
          "cds_start": 2128,
          "cds_end": null,
          "cds_length": 2778,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960680.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2017G>C",
          "hgvs_p": "p.Asp673His",
          "transcript": "NM_001407555.1",
          "protein_id": "NP_001394484.1",
          "transcript_support_level": null,
          "aa_start": 673,
          "aa_end": null,
          "aa_length": 919,
          "cds_start": 2017,
          "cds_end": null,
          "cds_length": 2760,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407555.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2017G>C",
          "hgvs_p": "p.Asp673His",
          "transcript": "ENST00000902273.1",
          "protein_id": "ENSP00000572332.1",
          "transcript_support_level": null,
          "aa_start": 673,
          "aa_end": null,
          "aa_length": 919,
          "cds_start": 2017,
          "cds_end": null,
          "cds_length": 2760,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000902273.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2014G>C",
          "hgvs_p": "p.Asp672His",
          "transcript": "NM_001407556.1",
          "protein_id": "NP_001394485.1",
          "transcript_support_level": null,
          "aa_start": 672,
          "aa_end": null,
          "aa_length": 918,
          "cds_start": 2014,
          "cds_end": null,
          "cds_length": 2757,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407556.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2014G>C",
          "hgvs_p": "p.Asp672His",
          "transcript": "NM_001407557.1",
          "protein_id": "NP_001394486.1",
          "transcript_support_level": null,
          "aa_start": 672,
          "aa_end": null,
          "aa_length": 918,
          "cds_start": 2014,
          "cds_end": null,
          "cds_length": 2757,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407557.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2128G>C",
          "hgvs_p": "p.Asp710His",
          "transcript": "NM_001407488.1",
          "protein_id": "NP_001394417.1",
          "transcript_support_level": null,
          "aa_start": 710,
          "aa_end": null,
          "aa_length": 894,
          "cds_start": 2128,
          "cds_end": null,
          "cds_length": 2685,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407488.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.1909G>C",
          "hgvs_p": "p.Asp637His",
          "transcript": "ENST00000960681.1",
          "protein_id": "ENSP00000630740.1",
          "transcript_support_level": null,
          "aa_start": 637,
          "aa_end": null,
          "aa_length": 883,
          "cds_start": 1909,
          "cds_end": null,
          "cds_length": 2652,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960681.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.1903G>C",
          "hgvs_p": "p.Asp635His",
          "transcript": "NM_001407558.1",
          "protein_id": "NP_001394487.1",
          "transcript_support_level": null,
          "aa_start": 635,
          "aa_end": null,
          "aa_length": 881,
          "cds_start": 1903,
          "cds_end": null,
          "cds_length": 2646,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407558.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.1810G>C",
          "hgvs_p": "p.Asp604His",
          "transcript": "ENST00000960679.1",
          "protein_id": "ENSP00000630738.1",
          "transcript_support_level": null,
          "aa_start": 604,
          "aa_end": null,
          "aa_length": 850,
          "cds_start": 1810,
          "cds_end": null,
          "cds_length": 2553,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960679.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2128G>C",
          "hgvs_p": "p.Asp710His",
          "transcript": "ENST00000902274.1",
          "protein_id": "ENSP00000572333.1",
          "transcript_support_level": null,
          "aa_start": 710,
          "aa_end": null,
          "aa_length": 843,
          "cds_start": 2128,
          "cds_end": null,
          "cds_length": 2532,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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      "gene_symbol": "THBS3",
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      "dbsnp": "rs1669010167",
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      "allele_count_reference_population": 2,
      "gnomad_exomes_af": 0.00000136816,
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      "gnomad_exomes_ac": 2,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
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      "computational_score_selected": 0.9599637985229492,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.10999999940395355,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.946,
      "revel_prediction": "Pathogenic",
      "alphamissense_score": 0.9922,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.6,
      "bayesdelnoaf_prediction": "Pathogenic",
      "phylop100way_score": 7.905,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0.11,
      "spliceai_max_prediction": "Benign",
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      "apogee2_score": null,
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      "acmg_score": 6,
      "acmg_classification": "Likely_pathogenic",
      "acmg_criteria": "PM2,PP3_Strong",
      "acmg_by_gene": [
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          "benign_score": 0,
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          "criteria": [
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            "PP3_Strong"
          ],
          "verdict": "Likely_pathogenic",
          "transcript": "NM_001407490.1",
          "gene_symbol": "THBS3",
          "hgnc_id": 11787,
          "effects": [
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          ],
          "inheritance_mode": "Unknown",
          "hgvs_c": "c.2299G>C",
          "hgvs_p": "p.Asp767His"
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        {
          "score": 6,
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          "criteria": [
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            "PP3_Strong"
          ],
          "verdict": "Likely_pathogenic",
          "transcript": "ENST00000454348.2",
          "gene_symbol": "THBS3-AS1",
          "hgnc_id": 40582,
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.1651C>G",
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      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}