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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-155198444-C-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=155198444&ref=C&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "1",
      "pos": 155198444,
      "ref": "C",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_001407490.1",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2039G>C",
          "hgvs_p": "p.Arg680Pro",
          "transcript": "NM_007112.5",
          "protein_id": "NP_009043.1",
          "transcript_support_level": null,
          "aa_start": 680,
          "aa_end": null,
          "aa_length": 956,
          "cds_start": 2039,
          "cds_end": null,
          "cds_length": 2871,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000368378.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_007112.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2039G>C",
          "hgvs_p": "p.Arg680Pro",
          "transcript": "ENST00000368378.7",
          "protein_id": "ENSP00000357362.3",
          "transcript_support_level": 1,
          "aa_start": 680,
          "aa_end": null,
          "aa_length": 956,
          "cds_start": 2039,
          "cds_end": null,
          "cds_length": 2871,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_007112.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000368378.7"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2012G>C",
          "hgvs_p": "p.Arg671Pro",
          "transcript": "ENST00000541576.5",
          "protein_id": "ENSP00000444792.2",
          "transcript_support_level": 1,
          "aa_start": 671,
          "aa_end": null,
          "aa_length": 947,
          "cds_start": 2012,
          "cds_end": null,
          "cds_length": 2844,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000541576.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.626G>C",
          "hgvs_p": "p.Arg209Pro",
          "transcript": "ENST00000541990.5",
          "protein_id": "ENSP00000437353.1",
          "transcript_support_level": 1,
          "aa_start": 209,
          "aa_end": null,
          "aa_length": 485,
          "cds_start": 626,
          "cds_end": null,
          "cds_length": 1458,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000541990.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2210G>C",
          "hgvs_p": "p.Arg737Pro",
          "transcript": "NM_001407490.1",
          "protein_id": "NP_001394419.1",
          "transcript_support_level": null,
          "aa_start": 737,
          "aa_end": null,
          "aa_length": 1013,
          "cds_start": 2210,
          "cds_end": null,
          "cds_length": 3042,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407490.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2048G>C",
          "hgvs_p": "p.Arg683Pro",
          "transcript": "NM_001407487.1",
          "protein_id": "NP_001394416.1",
          "transcript_support_level": null,
          "aa_start": 683,
          "aa_end": null,
          "aa_length": 959,
          "cds_start": 2048,
          "cds_end": null,
          "cds_length": 2880,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407487.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2048G>C",
          "hgvs_p": "p.Arg683Pro",
          "transcript": "ENST00000902275.1",
          "protein_id": "ENSP00000572334.1",
          "transcript_support_level": null,
          "aa_start": 683,
          "aa_end": null,
          "aa_length": 959,
          "cds_start": 2048,
          "cds_end": null,
          "cds_length": 2880,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000902275.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2039G>C",
          "hgvs_p": "p.Arg680Pro",
          "transcript": "ENST00000902272.1",
          "protein_id": "ENSP00000572331.1",
          "transcript_support_level": null,
          "aa_start": 680,
          "aa_end": null,
          "aa_length": 954,
          "cds_start": 2039,
          "cds_end": null,
          "cds_length": 2865,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000902272.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2012G>C",
          "hgvs_p": "p.Arg671Pro",
          "transcript": "NM_001252607.2",
          "protein_id": "NP_001239536.1",
          "transcript_support_level": null,
          "aa_start": 671,
          "aa_end": null,
          "aa_length": 947,
          "cds_start": 2012,
          "cds_end": null,
          "cds_length": 2844,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001252607.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.1949G>C",
          "hgvs_p": "p.Arg650Pro",
          "transcript": "NM_001407554.1",
          "protein_id": "NP_001394483.1",
          "transcript_support_level": null,
          "aa_start": 650,
          "aa_end": null,
          "aa_length": 926,
          "cds_start": 1949,
          "cds_end": null,
          "cds_length": 2781,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407554.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2039G>C",
          "hgvs_p": "p.Arg680Pro",
          "transcript": "ENST00000960680.1",
          "protein_id": "ENSP00000630739.1",
          "transcript_support_level": null,
          "aa_start": 680,
          "aa_end": null,
          "aa_length": 925,
          "cds_start": 2039,
          "cds_end": null,
          "cds_length": 2778,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960680.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.1928G>C",
          "hgvs_p": "p.Arg643Pro",
          "transcript": "NM_001407555.1",
          "protein_id": "NP_001394484.1",
          "transcript_support_level": null,
          "aa_start": 643,
          "aa_end": null,
          "aa_length": 919,
          "cds_start": 1928,
          "cds_end": null,
          "cds_length": 2760,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407555.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.1928G>C",
          "hgvs_p": "p.Arg643Pro",
          "transcript": "ENST00000902273.1",
          "protein_id": "ENSP00000572332.1",
          "transcript_support_level": null,
          "aa_start": 643,
          "aa_end": null,
          "aa_length": 919,
          "cds_start": 1928,
          "cds_end": null,
          "cds_length": 2760,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000902273.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.1925G>C",
          "hgvs_p": "p.Arg642Pro",
          "transcript": "NM_001407556.1",
          "protein_id": "NP_001394485.1",
          "transcript_support_level": null,
          "aa_start": 642,
          "aa_end": null,
          "aa_length": 918,
          "cds_start": 1925,
          "cds_end": null,
          "cds_length": 2757,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001407556.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.1925G>C",
          "hgvs_p": "p.Arg642Pro",
          "transcript": "NM_001407557.1",
          "protein_id": "NP_001394486.1",
          "transcript_support_level": null,
          "aa_start": 642,
          "aa_end": null,
          "aa_length": 918,
          "cds_start": 1925,
          "cds_end": null,
          "cds_length": 2757,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407557.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2039G>C",
          "hgvs_p": "p.Arg680Pro",
          "transcript": "NM_001407488.1",
          "protein_id": "NP_001394417.1",
          "transcript_support_level": null,
          "aa_start": 680,
          "aa_end": null,
          "aa_length": 894,
          "cds_start": 2039,
          "cds_end": null,
          "cds_length": 2685,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001407488.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.1820G>C",
          "hgvs_p": "p.Arg607Pro",
          "transcript": "ENST00000960681.1",
          "protein_id": "ENSP00000630740.1",
          "transcript_support_level": null,
          "aa_start": 607,
          "aa_end": null,
          "aa_length": 883,
          "cds_start": 1820,
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          "cds_length": 2652,
          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000960681.1"
        },
        {
          "aa_ref": "R",
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.1814G>C",
          "hgvs_p": "p.Arg605Pro",
          "transcript": "NM_001407558.1",
          "protein_id": "NP_001394487.1",
          "transcript_support_level": null,
          "aa_start": 605,
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          "aa_length": 881,
          "cds_start": 1814,
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          "cds_length": 2646,
          "cdna_start": null,
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          "cdna_length": null,
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          "biotype": "protein_coding",
          "feature": "NM_001407558.1"
        },
        {
          "aa_ref": "R",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.1721G>C",
          "hgvs_p": "p.Arg574Pro",
          "transcript": "ENST00000960679.1",
          "protein_id": "ENSP00000630738.1",
          "transcript_support_level": null,
          "aa_start": 574,
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          "aa_length": 850,
          "cds_start": 1721,
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          "cds_length": 2553,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960679.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "THBS3",
          "gene_hgnc_id": 11787,
          "hgvs_c": "c.2039G>C",
          "hgvs_p": "p.Arg680Pro",
          "transcript": "ENST00000902274.1",
          "protein_id": "ENSP00000572333.1",
          "transcript_support_level": null,
          "aa_start": 680,
          "aa_end": null,
          "aa_length": 843,
          "cds_start": 2039,
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          "cds_length": 2532,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "verdict": "Uncertain_significance",
          "transcript": "ENST00000436772.3",
          "gene_symbol": "THBS3-AS1",
          "hgnc_id": 40582,
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.414C>G",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}