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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-157746749-A-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=157746749&ref=A&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 157746749,
"ref": "A",
"alt": "T",
"effect": "stop_lost",
"transcript": "NM_001159488.2",
"consequences": [
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.1514T>A",
"hgvs_p": "p.Val505Glu",
"transcript": "NM_030764.4",
"protein_id": "NP_110391.2",
"transcript_support_level": null,
"aa_start": 505,
"aa_end": null,
"aa_length": 508,
"cds_start": 1514,
"cds_end": null,
"cds_length": 1527,
"cdna_start": 1573,
"cdna_end": null,
"cdna_length": 2589,
"mane_select": "ENST00000361516.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_030764.4"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.1514T>A",
"hgvs_p": "p.Val505Glu",
"transcript": "ENST00000361516.8",
"protein_id": "ENSP00000355157.3",
"transcript_support_level": 1,
"aa_start": 505,
"aa_end": null,
"aa_length": 508,
"cds_start": 1514,
"cds_end": null,
"cds_length": 1527,
"cdna_start": 1573,
"cdna_end": null,
"cdna_length": 2589,
"mane_select": "NM_030764.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000361516.8"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.596T>A",
"hgvs_p": "p.Val199Glu",
"transcript": "ENST00000368181.4",
"protein_id": "ENSP00000357163.4",
"transcript_support_level": 1,
"aa_start": 199,
"aa_end": null,
"aa_length": 202,
"cds_start": 596,
"cds_end": null,
"cds_length": 609,
"cdna_start": 655,
"cdna_end": null,
"cdna_length": 1669,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000368181.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "n.3432T>A",
"hgvs_p": null,
"transcript": "ENST00000368178.3",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4448,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000368178.3"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.1485T>A",
"hgvs_p": "p.Cys495*",
"transcript": "XM_017002316.2",
"protein_id": "XP_016857805.1",
"transcript_support_level": null,
"aa_start": 495,
"aa_end": null,
"aa_length": 523,
"cds_start": 1485,
"cds_end": null,
"cds_length": 1572,
"cdna_start": 1544,
"cdna_end": null,
"cdna_length": 2560,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017002316.2"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.1287T>A",
"hgvs_p": "p.Cys429*",
"transcript": "XM_017002317.2",
"protein_id": "XP_016857806.1",
"transcript_support_level": null,
"aa_start": 429,
"aa_end": null,
"aa_length": 457,
"cds_start": 1287,
"cds_end": null,
"cds_length": 1374,
"cdna_start": 1346,
"cdna_end": null,
"cdna_length": 2362,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017002317.2"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.1206T>A",
"hgvs_p": "p.Cys402*",
"transcript": "XM_017002318.2",
"protein_id": "XP_016857807.1",
"transcript_support_level": null,
"aa_start": 402,
"aa_end": null,
"aa_length": 430,
"cds_start": 1206,
"cds_end": null,
"cds_length": 1293,
"cdna_start": 1265,
"cdna_end": null,
"cdna_length": 2281,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017002318.2"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.1200T>A",
"hgvs_p": "p.Cys400*",
"transcript": "XM_017002319.2",
"protein_id": "XP_016857808.1",
"transcript_support_level": null,
"aa_start": 400,
"aa_end": null,
"aa_length": 428,
"cds_start": 1200,
"cds_end": null,
"cds_length": 1287,
"cdna_start": 1259,
"cdna_end": null,
"cdna_length": 2275,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017002319.2"
},
{
"aa_ref": "*",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_lost"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.1333T>A",
"hgvs_p": "p.Ter445Argext*?",
"transcript": "NM_001159488.2",
"protein_id": "NP_001152960.1",
"transcript_support_level": null,
"aa_start": 445,
"aa_end": null,
"aa_length": 444,
"cds_start": 1333,
"cds_end": null,
"cds_length": 1335,
"cdna_start": 1392,
"cdna_end": null,
"cdna_length": 2408,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001159488.2"
},
{
"aa_ref": "*",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_lost"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.1540T>A",
"hgvs_p": "p.Ter514Argext*?",
"transcript": "XM_011509974.4",
"protein_id": "XP_011508276.1",
"transcript_support_level": null,
"aa_start": 514,
"aa_end": null,
"aa_length": 513,
"cds_start": 1540,
"cds_end": null,
"cds_length": 1542,
"cdna_start": 1599,
"cdna_end": null,
"cdna_length": 2615,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011509974.4"
},
{
"aa_ref": "*",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_lost"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.1474T>A",
"hgvs_p": "p.Ter492Argext*?",
"transcript": "XM_011509975.4",
"protein_id": "XP_011508277.1",
"transcript_support_level": null,
"aa_start": 492,
"aa_end": null,
"aa_length": 491,
"cds_start": 1474,
"cds_end": null,
"cds_length": 1476,
"cdna_start": 1533,
"cdna_end": null,
"cdna_length": 2549,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011509975.4"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.1316T>A",
"hgvs_p": "p.Val439Glu",
"transcript": "ENST00000957326.1",
"protein_id": "ENSP00000627385.1",
"transcript_support_level": null,
"aa_start": 439,
"aa_end": null,
"aa_length": 442,
"cds_start": 1316,
"cds_end": null,
"cds_length": 1329,
"cdna_start": 1372,
"cdna_end": null,
"cdna_length": 2385,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000957326.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.1229T>A",
"hgvs_p": "p.Val410Glu",
"transcript": "ENST00000864375.1",
"protein_id": "ENSP00000534434.1",
"transcript_support_level": null,
"aa_start": 410,
"aa_end": null,
"aa_length": 413,
"cds_start": 1229,
"cds_end": null,
"cds_length": 1242,
"cdna_start": 1425,
"cdna_end": null,
"cdna_length": 2439,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000864375.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.1448T>A",
"hgvs_p": "p.Val483Glu",
"transcript": "XM_011509976.3",
"protein_id": "XP_011508278.1",
"transcript_support_level": null,
"aa_start": 483,
"aa_end": null,
"aa_length": 486,
"cds_start": 1448,
"cds_end": null,
"cds_length": 1461,
"cdna_start": 1507,
"cdna_end": null,
"cdna_length": 2523,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011509976.3"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.1235T>A",
"hgvs_p": "p.Val412Glu",
"transcript": "XM_047430270.1",
"protein_id": "XP_047286226.1",
"transcript_support_level": null,
"aa_start": 412,
"aa_end": null,
"aa_length": 415,
"cds_start": 1235,
"cds_end": null,
"cds_length": 1248,
"cdna_start": 1294,
"cdna_end": null,
"cdna_length": 2310,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047430270.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.1229T>A",
"hgvs_p": "p.Val410Glu",
"transcript": "XM_047430273.1",
"protein_id": "XP_047286229.1",
"transcript_support_level": null,
"aa_start": 410,
"aa_end": null,
"aa_length": 413,
"cds_start": 1229,
"cds_end": null,
"cds_length": 1242,
"cdna_start": 1288,
"cdna_end": null,
"cdna_length": 2304,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047430273.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "c.950T>A",
"hgvs_p": "p.Val317Glu",
"transcript": "XM_047430275.1",
"protein_id": "XP_047286231.1",
"transcript_support_level": null,
"aa_start": 317,
"aa_end": null,
"aa_length": 320,
"cds_start": 950,
"cds_end": null,
"cds_length": 963,
"cdna_start": 1009,
"cdna_end": null,
"cdna_length": 2025,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047430275.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"hgvs_c": "n.655T>A",
"hgvs_p": null,
"transcript": "NR_125358.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1671,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_125358.2"
}
],
"gene_symbol": "FCRL2",
"gene_hgnc_id": 14875,
"dbsnp": "rs1461154033",
"frequency_reference_population": 6.841649e-7,
"hom_count_reference_population": 0,
"allele_count_reference_population": 1,
"gnomad_exomes_af": 6.84165e-7,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.16377392411231995,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.131,
"revel_prediction": "Benign",
"alphamissense_score": 0.1542,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.33,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.166,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 4,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,PM4",
"acmg_by_gene": [
{
"score": 4,
"benign_score": 0,
"pathogenic_score": 4,
"criteria": [
"PM2",
"PM4"
],
"verdict": "Uncertain_significance",
"transcript": "NM_001159488.2",
"gene_symbol": "FCRL2",
"hgnc_id": 14875,
"effects": [
"stop_lost"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1333T>A",
"hgvs_p": "p.Ter445Argext*?"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}