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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-16562549-T-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=16562549&ref=T&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 16562549,
"ref": "T",
"alt": "A",
"effect": "3_prime_UTR_variant",
"transcript": "ENST00000430580.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
"hgvs_p": null,
"transcript": "NM_001405666.3",
"protein_id": "NP_001392595.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1087,
"cds_start": -4,
"cds_end": null,
"cds_length": 3264,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5935,
"mane_select": "ENST00000713538.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
"hgvs_p": null,
"transcript": "ENST00000430580.6",
"protein_id": "ENSP00000474456.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1139,
"cds_start": -4,
"cds_end": null,
"cds_length": 3420,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5932,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
"hgvs_p": null,
"transcript": "NM_001405667.2",
"protein_id": "NP_001392596.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1153,
"cds_start": -4,
"cds_end": null,
"cds_length": 3462,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6137,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
"hgvs_p": null,
"transcript": "NM_001405680.2",
"protein_id": "NP_001392609.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1150,
"cds_start": -4,
"cds_end": null,
"cds_length": 3453,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5942,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
"hgvs_p": null,
"transcript": "NM_001405681.2",
"protein_id": "NP_001392610.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1150,
"cds_start": -4,
"cds_end": null,
"cds_length": 3453,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6128,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
"hgvs_p": null,
"transcript": "NM_001405682.2",
"protein_id": "NP_001392611.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1150,
"cds_start": -4,
"cds_end": null,
"cds_length": 3453,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5972,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 28,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
"hgvs_p": null,
"transcript": "NM_001405668.2",
"protein_id": "NP_001392597.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1125,
"cds_start": -4,
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"cds_length": 3378,
"cdna_start": null,
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"cdna_length": 5867,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 28,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
"hgvs_p": null,
"transcript": "NM_001405669.2",
"protein_id": "NP_001392598.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1125,
"cds_start": -4,
"cds_end": null,
"cds_length": 3378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5770,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
"hgvs_p": null,
"transcript": "NM_001405670.2",
"protein_id": "NP_001392599.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1125,
"cds_start": -4,
"cds_end": null,
"cds_length": 3378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5893,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 28,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
"hgvs_p": null,
"transcript": "NM_001405671.2",
"protein_id": "NP_001392600.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1125,
"cds_start": -4,
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"cds_length": 3378,
"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
"hgvs_p": null,
"transcript": "NM_001405672.2",
"protein_id": "NP_001392601.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 28,
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"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NBPF1",
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"hgvs_c": "c.*1394A>T",
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"transcript": "NM_001405673.2",
"protein_id": "NP_001392602.1",
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"feature": null
},
{
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"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
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"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
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"transcript": "NM_001405674.2",
"protein_id": "NP_001392603.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
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"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
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},
{
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"strand": false,
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],
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"intron_rank": null,
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"gene_symbol": "NBPF1",
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"hgvs_c": "c.*1394A>T",
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"transcript": "NM_001405676.2",
"protein_id": "NP_001392605.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": 30,
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"exon_count": 30,
"intron_rank": null,
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"gene_symbol": "NBPF1",
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"hgvs_c": "c.*1394A>T",
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"transcript": "NM_001405677.2",
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},
{
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],
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"exon_count": 28,
"intron_rank": null,
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"gene_symbol": "NBPF1",
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"hgvs_c": "c.*1394A>T",
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"transcript": "NM_001405678.2",
"protein_id": "NP_001392607.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
"hgvs_p": null,
"transcript": "NM_001405683.2",
"protein_id": "NP_001392612.1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": 27,
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"exon_count": 27,
"intron_rank": null,
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"gene_symbol": "NBPF1",
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"hgvs_c": "c.*1394A>T",
"hgvs_p": null,
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},
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],
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"gene_symbol": "NBPF1",
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},
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],
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"intron_rank": null,
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"gene_symbol": "NBPF1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 28,
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"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
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"transcript": "NM_001405687.2",
"protein_id": "NP_001392616.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"mane_select": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 28,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NBPF1",
"gene_hgnc_id": 26088,
"hgvs_c": "c.*1394A>T",
"hgvs_p": null,
"transcript": "NM_001405692.2",
"protein_id": "NP_001392621.1",
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}
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}