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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-1752908-C-CCCTCCTCCTCCT (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=1752908&ref=C&alt=CCCTCCTCCTCCT&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 1752908,
"ref": "C",
"alt": "CCCTCCTCCTCCT",
"effect": "conservative_inframe_insertion",
"transcript": "ENST00000341426.9",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "EEEEG",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"conservative_inframe_insertion"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "c.1325_1336dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu442_Glu445dup",
"transcript": "NM_023018.5",
"protein_id": "NP_075394.3",
"transcript_support_level": null,
"aa_start": 446,
"aa_end": null,
"aa_length": 446,
"cds_start": 1336,
"cds_end": null,
"cds_length": 1341,
"cdna_start": 1558,
"cdna_end": null,
"cdna_length": 3235,
"mane_select": "ENST00000341426.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "EEEEG",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"conservative_inframe_insertion"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "c.1325_1336dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu442_Glu445dup",
"transcript": "ENST00000341426.9",
"protein_id": "ENSP00000341679.5",
"transcript_support_level": 2,
"aa_start": 446,
"aa_end": null,
"aa_length": 446,
"cds_start": 1336,
"cds_end": null,
"cds_length": 1341,
"cdna_start": 1558,
"cdna_end": null,
"cdna_length": 3235,
"mane_select": "NM_023018.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "EEEEG",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"conservative_inframe_insertion"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "c.1760_1771dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu587_Glu590dup",
"transcript": "ENST00000378625.5",
"protein_id": "ENSP00000367890.1",
"transcript_support_level": 1,
"aa_start": 591,
"aa_end": null,
"aa_length": 591,
"cds_start": 1771,
"cds_end": null,
"cds_length": 1776,
"cdna_start": 1976,
"cdna_end": null,
"cdna_length": 3653,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "EEEEG",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"conservative_inframe_insertion"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "c.1325_1336dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu442_Glu445dup",
"transcript": "ENST00000341991.7",
"protein_id": "ENSP00000344340.3",
"transcript_support_level": 1,
"aa_start": 446,
"aa_end": null,
"aa_length": 446,
"cds_start": 1336,
"cds_end": null,
"cds_length": 1341,
"cdna_start": 1421,
"cdna_end": null,
"cdna_length": 3098,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "EEEEG",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"conservative_inframe_insertion"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "c.1760_1771dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu587_Glu590dup",
"transcript": "NM_001198994.2",
"protein_id": "NP_001185923.1",
"transcript_support_level": null,
"aa_start": 591,
"aa_end": null,
"aa_length": 591,
"cds_start": 1771,
"cds_end": null,
"cds_length": 1776,
"cdna_start": 1938,
"cdna_end": null,
"cdna_length": 3615,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "EEEEG",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"conservative_inframe_insertion"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "c.1325_1336dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu442_Glu445dup",
"transcript": "NM_001198993.2",
"protein_id": "NP_001185922.1",
"transcript_support_level": null,
"aa_start": 446,
"aa_end": null,
"aa_length": 446,
"cds_start": 1336,
"cds_end": null,
"cds_length": 1341,
"cdna_start": 1447,
"cdna_end": null,
"cdna_length": 3124,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "EEEEG",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"conservative_inframe_insertion"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "c.1325_1336dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu442_Glu445dup",
"transcript": "NM_001353641.2",
"protein_id": "NP_001340570.1",
"transcript_support_level": null,
"aa_start": 446,
"aa_end": null,
"aa_length": 446,
"cds_start": 1336,
"cds_end": null,
"cds_length": 1341,
"cdna_start": 1503,
"cdna_end": null,
"cdna_length": 3180,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "EEEEG",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"conservative_inframe_insertion"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "c.1229_1240dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu410_Glu413dup",
"transcript": "NM_001198995.1",
"protein_id": "NP_001185924.1",
"transcript_support_level": null,
"aa_start": 414,
"aa_end": null,
"aa_length": 414,
"cds_start": 1240,
"cds_end": null,
"cds_length": 1245,
"cdna_start": 1351,
"cdna_end": null,
"cdna_length": 3028,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "EEEEG",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"conservative_inframe_insertion"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "c.1229_1240dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu410_Glu413dup",
"transcript": "ENST00000342348.9",
"protein_id": "ENSP00000339727.5",
"transcript_support_level": 2,
"aa_start": 414,
"aa_end": null,
"aa_length": 414,
"cds_start": 1240,
"cds_end": null,
"cds_length": 1245,
"cdna_start": 1284,
"cdna_end": null,
"cdna_length": 1722,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "EEEEG",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"conservative_inframe_insertion"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "c.1064_1075dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu355_Glu358dup",
"transcript": "NM_001353642.2",
"protein_id": "NP_001340571.1",
"transcript_support_level": null,
"aa_start": 359,
"aa_end": null,
"aa_length": 359,
"cds_start": 1075,
"cds_end": null,
"cds_length": 1080,
"cdna_start": 1619,
"cdna_end": null,
"cdna_length": 3296,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "EEEEG",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"conservative_inframe_insertion"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "c.1637_1648dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu546_Glu549dup",
"transcript": "XM_047428656.1",
"protein_id": "XP_047284612.1",
"transcript_support_level": null,
"aa_start": 550,
"aa_end": null,
"aa_length": 550,
"cds_start": 1648,
"cds_end": null,
"cds_length": 1653,
"cdna_start": 1870,
"cdna_end": null,
"cdna_length": 3547,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "EEEEG",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"conservative_inframe_insertion"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "c.1325_1336dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu442_Glu445dup",
"transcript": "XM_047428631.1",
"protein_id": "XP_047284587.1",
"transcript_support_level": null,
"aa_start": 446,
"aa_end": null,
"aa_length": 446,
"cds_start": 1336,
"cds_end": null,
"cds_length": 1341,
"cdna_start": 1734,
"cdna_end": null,
"cdna_length": 3411,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "EEEEG",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"conservative_inframe_insertion"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "c.1016_1027dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu339_Glu342dup",
"transcript": "XM_011542009.3",
"protein_id": "XP_011540311.1",
"transcript_support_level": null,
"aa_start": 343,
"aa_end": null,
"aa_length": 343,
"cds_start": 1027,
"cds_end": null,
"cds_length": 1032,
"cdna_start": 1178,
"cdna_end": null,
"cdna_length": 2855,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "EEEEG",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"conservative_inframe_insertion"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "c.989_1000dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu330_Glu333dup",
"transcript": "XM_017002144.3",
"protein_id": "XP_016857633.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 334,
"cds_start": 1000,
"cds_end": null,
"cds_length": 1005,
"cdna_start": 1150,
"cdna_end": null,
"cdna_length": 2827,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "EEEEG",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"conservative_inframe_insertion"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "c.926_937dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu309_Glu312dup",
"transcript": "XM_047428647.1",
"protein_id": "XP_047284603.1",
"transcript_support_level": null,
"aa_start": 313,
"aa_end": null,
"aa_length": 313,
"cds_start": 937,
"cds_end": null,
"cds_length": 942,
"cdna_start": 1047,
"cdna_end": null,
"cdna_length": 2724,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "n.1389_1400dupAGGAGGAGGAGG",
"hgvs_p": null,
"transcript": "XR_946747.3",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3077,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"downstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"hgvs_c": "n.*207_*218dupAGGAGGAGGAGG",
"hgvs_p": null,
"transcript": "ENST00000498806.1",
"protein_id": "ENSP00000464137.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 269,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "NADK",
"gene_hgnc_id": 29831,
"dbsnp": "rs71578334",
"frequency_reference_population": 0.000017037784,
"hom_count_reference_population": 0,
"allele_count_reference_population": 26,
"gnomad_exomes_af": 0.0000159863,
"gnomad_genomes_af": 0.0000266944,
"gnomad_exomes_ac": 22,
"gnomad_genomes_ac": 4,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": null,
"computational_prediction_selected": null,
"computational_source_selected": null,
"splice_score_selected": null,
"splice_prediction_selected": null,
"splice_source_selected": null,
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": null,
"bayesdelnoaf_prediction": null,
"phylop100way_score": 0.315,
"phylop100way_prediction": "Benign",
"spliceai_max_score": null,
"spliceai_max_prediction": null,
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -1,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP3",
"acmg_by_gene": [
{
"score": -1,
"benign_score": 1,
"pathogenic_score": 0,
"criteria": [
"BP3"
],
"verdict": "Likely_benign",
"transcript": "ENST00000341426.9",
"gene_symbol": "NADK",
"hgnc_id": 29831,
"effects": [
"conservative_inframe_insertion"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1325_1336dupAGGAGGAGGAGG",
"hgvs_p": "p.Glu442_Glu445dup"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}