← Back to variant description
GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-179996722-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=179996722&ref=A&alt=G&genome=hg38&allGenes=true"
API Response
json
{
"variants": [
{
"chr": "1",
"pos": 179996722,
"ref": "A",
"alt": "G",
"effect": "missense_variant",
"transcript": "NM_014810.5",
"consequences": [
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.565A>G",
"hgvs_p": "p.Ile189Val",
"transcript": "NM_014810.5",
"protein_id": "NP_055625.4",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 3117,
"cds_start": 565,
"cds_end": null,
"cds_length": 9354,
"cdna_start": 911,
"cdna_end": null,
"cdna_length": 13414,
"mane_select": "ENST00000367607.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.565A>G",
"hgvs_p": "p.Ile189Val",
"transcript": "ENST00000367607.8",
"protein_id": "ENSP00000356579.3",
"transcript_support_level": 1,
"aa_start": 189,
"aa_end": null,
"aa_length": 3117,
"cds_start": 565,
"cds_end": null,
"cds_length": 9354,
"cdna_start": 911,
"cdna_end": null,
"cdna_length": 13414,
"mane_select": "NM_014810.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.*216A>G",
"hgvs_p": null,
"transcript": "ENST00000429851.6",
"protein_id": "ENSP00000412460.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13277,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.*216A>G",
"hgvs_p": null,
"transcript": "ENST00000429851.6",
"protein_id": "ENSP00000412460.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13277,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.565A>G",
"hgvs_p": "p.Ile189Val",
"transcript": "ENST00000713622.1",
"protein_id": "ENSP00000518920.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 3158,
"cds_start": 565,
"cds_end": null,
"cds_length": 9477,
"cdna_start": 911,
"cdna_end": null,
"cdna_length": 13537,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.562A>G",
"hgvs_p": "p.Ile188Val",
"transcript": "ENST00000417046.2",
"protein_id": "ENSP00000401608.2",
"transcript_support_level": 2,
"aa_start": 188,
"aa_end": null,
"aa_length": 3116,
"cds_start": 562,
"cds_end": null,
"cds_length": 9351,
"cdna_start": 1190,
"cdna_end": null,
"cdna_length": 12437,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 41,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.565A>G",
"hgvs_p": "p.Ile189Val",
"transcript": "XM_047435376.1",
"protein_id": "XP_047291332.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 3189,
"cds_start": 565,
"cds_end": null,
"cds_length": 9570,
"cdna_start": 775,
"cdna_end": null,
"cdna_length": 12253,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.562A>G",
"hgvs_p": "p.Ile188Val",
"transcript": "XM_047435377.1",
"protein_id": "XP_047291333.1",
"transcript_support_level": null,
"aa_start": 188,
"aa_end": null,
"aa_length": 3166,
"cds_start": 562,
"cds_end": null,
"cds_length": 9501,
"cdna_start": 771,
"cdna_end": null,
"cdna_length": 13424,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.562A>G",
"hgvs_p": "p.Ile188Val",
"transcript": "XM_047435378.1",
"protein_id": "XP_047291334.1",
"transcript_support_level": null,
"aa_start": 188,
"aa_end": null,
"aa_length": 3165,
"cds_start": 562,
"cds_end": null,
"cds_length": 9498,
"cdna_start": 772,
"cdna_end": null,
"cdna_length": 13422,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.562A>G",
"hgvs_p": "p.Ile188Val",
"transcript": "XM_047435382.1",
"protein_id": "XP_047291338.1",
"transcript_support_level": null,
"aa_start": 188,
"aa_end": null,
"aa_length": 3162,
"cds_start": 562,
"cds_end": null,
"cds_length": 9489,
"cdna_start": 772,
"cdna_end": null,
"cdna_length": 13413,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.565A>G",
"hgvs_p": "p.Ile189Val",
"transcript": "XM_047435384.1",
"protein_id": "XP_047291340.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 3157,
"cds_start": 565,
"cds_end": null,
"cds_length": 9474,
"cdna_start": 774,
"cdna_end": null,
"cdna_length": 13397,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 40,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.565A>G",
"hgvs_p": "p.Ile189Val",
"transcript": "XM_047435387.1",
"protein_id": "XP_047291343.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 3148,
"cds_start": 565,
"cds_end": null,
"cds_length": 9447,
"cdna_start": 774,
"cdna_end": null,
"cdna_length": 12129,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.499A>G",
"hgvs_p": "p.Ile167Val",
"transcript": "XM_047435392.1",
"protein_id": "XP_047291348.1",
"transcript_support_level": null,
"aa_start": 167,
"aa_end": null,
"aa_length": 3145,
"cds_start": 499,
"cds_end": null,
"cds_length": 9438,
"cdna_start": 793,
"cdna_end": null,
"cdna_length": 13446,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.565A>G",
"hgvs_p": "p.Ile189Val",
"transcript": "XM_047435394.1",
"protein_id": "XP_047291350.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 3144,
"cds_start": 565,
"cds_end": null,
"cds_length": 9435,
"cdna_start": 774,
"cdna_end": null,
"cdna_length": 13358,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.499A>G",
"hgvs_p": "p.Ile167Val",
"transcript": "XM_047435399.1",
"protein_id": "XP_047291355.1",
"transcript_support_level": null,
"aa_start": 167,
"aa_end": null,
"aa_length": 3141,
"cds_start": 499,
"cds_end": null,
"cds_length": 9426,
"cdna_start": 793,
"cdna_end": null,
"cdna_length": 13434,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.499A>G",
"hgvs_p": "p.Ile167Val",
"transcript": "XM_047435400.1",
"protein_id": "XP_047291356.1",
"transcript_support_level": null,
"aa_start": 167,
"aa_end": null,
"aa_length": 3126,
"cds_start": 499,
"cds_end": null,
"cds_length": 9381,
"cdna_start": 793,
"cdna_end": null,
"cdna_length": 13389,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.565A>G",
"hgvs_p": "p.Ile189Val",
"transcript": "XM_047435401.1",
"protein_id": "XP_047291357.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 3126,
"cds_start": 565,
"cds_end": null,
"cds_length": 9381,
"cdna_start": 774,
"cdna_end": null,
"cdna_length": 12063,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.562A>G",
"hgvs_p": "p.Ile188Val",
"transcript": "XM_047435402.1",
"protein_id": "XP_047291358.1",
"transcript_support_level": null,
"aa_start": 188,
"aa_end": null,
"aa_length": 3125,
"cds_start": 562,
"cds_end": null,
"cds_length": 9378,
"cdna_start": 771,
"cdna_end": null,
"cdna_length": 13301,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.565A>G",
"hgvs_p": "p.Ile189Val",
"transcript": "XM_047435403.1",
"protein_id": "XP_047291359.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 3125,
"cds_start": 565,
"cds_end": null,
"cds_length": 9378,
"cdna_start": 774,
"cdna_end": null,
"cdna_length": 13301,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.565A>G",
"hgvs_p": "p.Ile189Val",
"transcript": "XM_047435404.1",
"protein_id": "XP_047291360.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 3122,
"cds_start": 565,
"cds_end": null,
"cds_length": 9369,
"cdna_start": 774,
"cdna_end": null,
"cdna_length": 13292,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.565A>G",
"hgvs_p": "p.Ile189Val",
"transcript": "XM_047435406.1",
"protein_id": "XP_047291362.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 3117,
"cds_start": 565,
"cds_end": null,
"cds_length": 9354,
"cdna_start": 774,
"cdna_end": null,
"cdna_length": 12036,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.562A>G",
"hgvs_p": "p.Ile188Val",
"transcript": "XM_047435414.1",
"protein_id": "XP_047291370.1",
"transcript_support_level": null,
"aa_start": 188,
"aa_end": null,
"aa_length": 3116,
"cds_start": 562,
"cds_end": null,
"cds_length": 9351,
"cdna_start": 770,
"cdna_end": null,
"cdna_length": 13273,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.565A>G",
"hgvs_p": "p.Ile189Val",
"transcript": "XM_047435423.1",
"protein_id": "XP_047291379.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 3116,
"cds_start": 565,
"cds_end": null,
"cds_length": 9351,
"cdna_start": 774,
"cdna_end": null,
"cdna_length": 13274,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.565A>G",
"hgvs_p": "p.Ile189Val",
"transcript": "XM_047435429.1",
"protein_id": "XP_047291385.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 3113,
"cds_start": 565,
"cds_end": null,
"cds_length": 9342,
"cdna_start": 774,
"cdna_end": null,
"cdna_length": 12024,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.562A>G",
"hgvs_p": "p.Ile188Val",
"transcript": "XM_047435430.1",
"protein_id": "XP_047291386.1",
"transcript_support_level": null,
"aa_start": 188,
"aa_end": null,
"aa_length": 3112,
"cds_start": 562,
"cds_end": null,
"cds_length": 9339,
"cdna_start": 771,
"cdna_end": null,
"cdna_length": 13262,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.499A>G",
"hgvs_p": "p.Ile167Val",
"transcript": "XM_047435433.1",
"protein_id": "XP_047291389.1",
"transcript_support_level": null,
"aa_start": 167,
"aa_end": null,
"aa_length": 3104,
"cds_start": 499,
"cds_end": null,
"cds_length": 9315,
"cdna_start": 793,
"cdna_end": null,
"cdna_length": 13323,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.499A>G",
"hgvs_p": "p.Ile167Val",
"transcript": "XM_047435436.1",
"protein_id": "XP_047291392.1",
"transcript_support_level": null,
"aa_start": 167,
"aa_end": null,
"aa_length": 3103,
"cds_start": 499,
"cds_end": null,
"cds_length": 9312,
"cdna_start": 793,
"cdna_end": null,
"cdna_length": 13320,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.502A>G",
"hgvs_p": "p.Ile168Val",
"transcript": "XM_047435442.1",
"protein_id": "XP_047291398.1",
"transcript_support_level": null,
"aa_start": 168,
"aa_end": null,
"aa_length": 3096,
"cds_start": 502,
"cds_end": null,
"cds_length": 9291,
"cdna_start": 796,
"cdna_end": null,
"cdna_length": 13299,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.499A>G",
"hgvs_p": "p.Ile167Val",
"transcript": "XM_047435445.1",
"protein_id": "XP_047291401.1",
"transcript_support_level": null,
"aa_start": 167,
"aa_end": null,
"aa_length": 3095,
"cds_start": 499,
"cds_end": null,
"cds_length": 9288,
"cdna_start": 793,
"cdna_end": null,
"cdna_length": 12055,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.499A>G",
"hgvs_p": "p.Ile167Val",
"transcript": "XM_047435455.1",
"protein_id": "XP_047291411.1",
"transcript_support_level": null,
"aa_start": 167,
"aa_end": null,
"aa_length": 3094,
"cds_start": 499,
"cds_end": null,
"cds_length": 9285,
"cdna_start": 793,
"cdna_end": null,
"cdna_length": 13293,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.502A>G",
"hgvs_p": "p.Ile168Val",
"transcript": "XM_047435459.1",
"protein_id": "XP_047291415.1",
"transcript_support_level": null,
"aa_start": 168,
"aa_end": null,
"aa_length": 3092,
"cds_start": 502,
"cds_end": null,
"cds_length": 9279,
"cdna_start": 796,
"cdna_end": null,
"cdna_length": 13287,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "c.499A>G",
"hgvs_p": "p.Ile167Val",
"transcript": "XM_047435466.1",
"protein_id": "XP_047291422.1",
"transcript_support_level": null,
"aa_start": 167,
"aa_end": null,
"aa_length": 3091,
"cds_start": 499,
"cds_end": null,
"cds_length": 9276,
"cdna_start": 793,
"cdna_end": null,
"cdna_length": 13284,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.*216A>G",
"hgvs_p": null,
"transcript": "ENST00000418229.6",
"protein_id": "ENSP00000407044.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13246,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.562A>G",
"hgvs_p": null,
"transcript": "ENST00000490047.2",
"protein_id": "ENSP00000432910.2",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 12110,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.818A>G",
"hgvs_p": null,
"transcript": "ENST00000491495.2",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1059,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.562A>G",
"hgvs_p": null,
"transcript": "ENST00000706234.1",
"protein_id": "ENSP00000516289.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13801,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.1190A>G",
"hgvs_p": null,
"transcript": "ENST00000706235.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13785,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.972A>G",
"hgvs_p": null,
"transcript": "ENST00000706238.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4236,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.487A>G",
"hgvs_p": null,
"transcript": "ENST00000706239.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3635,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 41,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.*346A>G",
"hgvs_p": null,
"transcript": "ENST00000706241.1",
"protein_id": "ENSP00000516290.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13847,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.589A>G",
"hgvs_p": null,
"transcript": "ENST00000706242.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1414,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.*95A>G",
"hgvs_p": null,
"transcript": "ENST00000706262.1",
"protein_id": "ENSP00000516309.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13007,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.*216A>G",
"hgvs_p": null,
"transcript": "ENST00000706263.1",
"protein_id": "ENSP00000516310.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4169,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.*216A>G",
"hgvs_p": null,
"transcript": "ENST00000706265.1",
"protein_id": "ENSP00000516311.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9886,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.*216A>G",
"hgvs_p": null,
"transcript": "ENST00000418229.6",
"protein_id": "ENSP00000407044.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13246,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 41,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.*346A>G",
"hgvs_p": null,
"transcript": "ENST00000706241.1",
"protein_id": "ENSP00000516290.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13847,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.*95A>G",
"hgvs_p": null,
"transcript": "ENST00000706262.1",
"protein_id": "ENSP00000516309.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13007,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.*216A>G",
"hgvs_p": null,
"transcript": "ENST00000706263.1",
"protein_id": "ENSP00000516310.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4169,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"hgvs_c": "n.*216A>G",
"hgvs_p": null,
"transcript": "ENST00000706265.1",
"protein_id": "ENSP00000516311.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9886,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ENSG00000303101",
"gene_hgnc_id": null,
"hgvs_c": "n.168-12202T>C",
"hgvs_p": null,
"transcript": "ENST00000791713.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 415,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ENSG00000303101",
"gene_hgnc_id": null,
"hgvs_c": "n.119-12202T>C",
"hgvs_p": null,
"transcript": "ENST00000791714.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 366,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "CEP350",
"gene_hgnc_id": 24238,
"dbsnp": "rs201996337",
"frequency_reference_population": 0.000066312256,
"hom_count_reference_population": 0,
"allele_count_reference_population": 107,
"gnomad_exomes_af": 0.0000588509,
"gnomad_genomes_af": 0.000137924,
"gnomad_exomes_ac": 86,
"gnomad_genomes_ac": 21,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.008196115493774414,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.014,
"revel_prediction": "Benign",
"alphamissense_score": 0.0735,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.72,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 1.556,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -2,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong",
"acmg_by_gene": [
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "NM_014810.5",
"gene_symbol": "CEP350",
"hgnc_id": 24238,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.565A>G",
"hgvs_p": "p.Ile189Val"
},
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "ENST00000791713.1",
"gene_symbol": "ENSG00000303101",
"hgnc_id": null,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.168-12202T>C",
"hgvs_p": null
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}