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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-19237708-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=19237708&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 19237708,
"ref": "G",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000477853.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "c.1212+309C>T",
"hgvs_p": null,
"transcript": "NM_015047.3",
"protein_id": "NP_055862.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 993,
"cds_start": -4,
"cds_end": null,
"cds_length": 2982,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6640,
"mane_select": "ENST00000477853.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "c.1212+309C>T",
"hgvs_p": null,
"transcript": "ENST00000477853.6",
"protein_id": "ENSP00000420608.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 993,
"cds_start": -4,
"cds_end": null,
"cds_length": 2982,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6640,
"mane_select": "NM_015047.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "c.1209+309C>T",
"hgvs_p": null,
"transcript": "ENST00000375199.7",
"protein_id": "ENSP00000364345.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 992,
"cds_start": -4,
"cds_end": null,
"cds_length": 2979,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5408,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "c.1212+309C>T",
"hgvs_p": null,
"transcript": "NM_001375820.1",
"protein_id": "NP_001362749.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 996,
"cds_start": -4,
"cds_end": null,
"cds_length": 2991,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6649,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "c.1212+309C>T",
"hgvs_p": null,
"transcript": "ENST00000486405.2",
"protein_id": "ENSP00000419345.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 996,
"cds_start": -4,
"cds_end": null,
"cds_length": 2991,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2991,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "c.1209+309C>T",
"hgvs_p": null,
"transcript": "NM_001375821.1",
"protein_id": "NP_001362750.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 995,
"cds_start": -4,
"cds_end": null,
"cds_length": 2988,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6646,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "c.1209+309C>T",
"hgvs_p": null,
"transcript": "NM_001271427.2",
"protein_id": "NP_001258356.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 992,
"cds_start": -4,
"cds_end": null,
"cds_length": 2979,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6637,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "c.1212+309C>T",
"hgvs_p": null,
"transcript": "NM_001271428.2",
"protein_id": "NP_001258357.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 992,
"cds_start": -4,
"cds_end": null,
"cds_length": 2979,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6637,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "c.1206+309C>T",
"hgvs_p": null,
"transcript": "ENST00000690823.1",
"protein_id": "ENSP00000509286.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 991,
"cds_start": -4,
"cds_end": null,
"cds_length": 2976,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5488,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "c.1146+309C>T",
"hgvs_p": null,
"transcript": "NM_001271429.2",
"protein_id": "NP_001258358.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 971,
"cds_start": -4,
"cds_end": null,
"cds_length": 2916,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6574,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "c.1146+309C>T",
"hgvs_p": null,
"transcript": "ENST00000375208.7",
"protein_id": "ENSP00000364354.3",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 971,
"cds_start": -4,
"cds_end": null,
"cds_length": 2916,
"cdna_start": null,
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"cdna_length": 4084,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "c.1212+309C>T",
"hgvs_p": null,
"transcript": "ENST00000688219.1",
"protein_id": "ENSP00000510231.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 952,
"cds_start": -4,
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"cds_length": 2859,
"cdna_start": null,
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"cdna_length": 6517,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "c.1212+309C>T",
"hgvs_p": null,
"transcript": "ENST00000690732.1",
"protein_id": "ENSP00000510581.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 939,
"cds_start": -4,
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"cds_length": 2820,
"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "EMC1-AS1",
"gene_hgnc_id": 54050,
"hgvs_c": "n.231-2549G>A",
"hgvs_p": null,
"transcript": "ENST00000437898.4",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
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"aa_length": null,
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},
{
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 21,
"intron_rank": 9,
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"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "n.*1491+309C>T",
"hgvs_p": null,
"transcript": "ENST00000685099.1",
"protein_id": "ENSP00000509737.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 24,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "n.1212+309C>T",
"hgvs_p": null,
"transcript": "ENST00000685594.1",
"protein_id": "ENSP00000510232.1",
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},
{
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"strand": false,
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],
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"intron_rank": 10,
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"gene_symbol": "EMC1",
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"hgvs_c": "n.*973+309C>T",
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"transcript": "ENST00000688332.1",
"protein_id": "ENSP00000509718.1",
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 23,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "n.1212+309C>T",
"hgvs_p": null,
"transcript": "ENST00000688667.1",
"protein_id": "ENSP00000509418.1",
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
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],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 9,
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"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"hgvs_c": "n.2660+309C>T",
"hgvs_p": null,
"transcript": "ENST00000690451.1",
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},
{
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"strand": false,
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],
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"intron_rank": 10,
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"gene_symbol": "EMC1",
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"hgvs_c": "n.*976+309C>T",
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"transcript": "ENST00000692207.1",
"protein_id": "ENSP00000509071.1",
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "EMC1-AS1",
"gene_hgnc_id": 54050,
"hgvs_c": "n.83-2549G>A",
"hgvs_p": null,
"transcript": "ENST00000842450.1",
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},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "EMC1-AS1",
"gene_hgnc_id": 54050,
"hgvs_c": "n.175-2549G>A",
"hgvs_p": null,
"transcript": "NR_135114.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 622,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "EMC1",
"gene_hgnc_id": 28957,
"dbsnp": "rs710882",
"frequency_reference_population": 0.19050688,
"hom_count_reference_population": 3573,
"allele_count_reference_population": 28978,
"gnomad_exomes_af": null,
"gnomad_genomes_af": 0.190507,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": 28978,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": 3573,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.8199999928474426,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.82,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.188,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -12,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BA1",
"acmg_by_gene": [
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000477853.6",
"gene_symbol": "EMC1",
"hgnc_id": 28957,
"effects": [
"intron_variant"
],
"inheritance_mode": "AR,AD",
"hgvs_c": "c.1212+309C>T",
"hgvs_p": null
},
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000437898.4",
"gene_symbol": "EMC1-AS1",
"hgnc_id": 54050,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.231-2549G>A",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}