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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-21616643-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=21616643&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 21616643,
"ref": "C",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000374765.9",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "RAP1GAP",
"gene_hgnc_id": 9858,
"hgvs_c": "c.291+663G>A",
"hgvs_p": null,
"transcript": "NM_002885.4",
"protein_id": "NP_002876.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 663,
"cds_start": -4,
"cds_end": null,
"cds_length": 1992,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3322,
"mane_select": "ENST00000374765.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "RAP1GAP",
"gene_hgnc_id": 9858,
"hgvs_c": "c.291+663G>A",
"hgvs_p": null,
"transcript": "ENST00000374765.9",
"protein_id": "ENSP00000363897.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 663,
"cds_start": -4,
"cds_end": null,
"cds_length": 1992,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3322,
"mane_select": "NM_002885.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "RAP1GAP",
"gene_hgnc_id": 9858,
"hgvs_c": "c.291+663G>A",
"hgvs_p": null,
"transcript": "ENST00000374763.6",
"protein_id": "ENSP00000363895.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 748,
"cds_start": -4,
"cds_end": null,
"cds_length": 2247,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3334,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "RAP1GAP",
"gene_hgnc_id": 9858,
"hgvs_c": "c.483+663G>A",
"hgvs_p": null,
"transcript": "ENST00000495204.5",
"protein_id": "ENSP00000434033.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 727,
"cds_start": -4,
"cds_end": null,
"cds_length": 2184,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2489,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "RAP1GAP",
"gene_hgnc_id": 9858,
"hgvs_c": "c.291+663G>A",
"hgvs_p": null,
"transcript": "ENST00000542643.6",
"protein_id": "ENSP00000441661.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 681,
"cds_start": -4,
"cds_end": null,
"cds_length": 2046,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3426,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "RAP1GAP",
"gene_hgnc_id": 9858,
"hgvs_c": "c.291+663G>A",
"hgvs_p": null,
"transcript": "NM_001388200.1",
"protein_id": "NP_001375129.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 842,
"cds_start": -4,
"cds_end": null,
"cds_length": 2529,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3534,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "RAP1GAP",
"gene_hgnc_id": 9858,
"hgvs_c": "c.291+663G>A",
"hgvs_p": null,
"transcript": "NM_001388201.1",
"protein_id": "NP_001375130.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 834,
"cds_start": -4,
"cds_end": null,
"cds_length": 2505,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3510,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "RAP1GAP",
"gene_hgnc_id": 9858,
"hgvs_c": "c.483+663G>A",
"hgvs_p": null,
"transcript": "NM_001388296.1",
"protein_id": "NP_001375225.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 821,
"cds_start": -4,
"cds_end": null,
"cds_length": 2466,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3295,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "RAP1GAP",
"gene_hgnc_id": 9858,
"hgvs_c": "c.483+663G>A",
"hgvs_p": null,
"transcript": "NM_001388295.1",
"protein_id": "NP_001375224.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 812,
"cds_start": -4,
"cds_end": null,
"cds_length": 2439,
"cdna_start": null,
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"cdna_length": 3593,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 26,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "RAP1GAP",
"gene_hgnc_id": 9858,
"hgvs_c": "c.483+663G>A",
"hgvs_p": null,
"transcript": "NM_001388294.1",
"protein_id": "NP_001375223.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 804,
"cds_start": -4,
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"cdna_start": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 9,
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"gene_symbol": "RAP1GAP",
"gene_hgnc_id": 9858,
"hgvs_c": "c.291+663G>A",
"hgvs_p": null,
"transcript": "NM_001388202.1",
"protein_id": "NP_001375131.1",
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},
{
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"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "RAP1GAP",
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"transcript": "NM_001388203.1",
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},
{
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],
"exon_rank": null,
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"exon_count": 24,
"intron_rank": 7,
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"gene_symbol": "RAP1GAP",
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"hgvs_c": "c.291+663G>A",
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"transcript": "NM_001388204.1",
"protein_id": "NP_001375133.1",
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},
{
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],
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"intron_rank": 7,
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"gene_symbol": "RAP1GAP",
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"hgvs_c": "c.483+663G>A",
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"transcript": "NM_001388293.1",
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},
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],
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"gene_symbol": "RAP1GAP",
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"transcript": "NM_001330383.3",
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},
{
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],
"exon_rank": null,
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"intron_rank": 6,
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"gene_symbol": "RAP1GAP",
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"hgvs_c": "c.291+663G>A",
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"protein_id": "NP_001375134.1",
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},
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],
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"gene_symbol": "RAP1GAP",
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"transcript": "NM_001388206.1",
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},
{
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"consequences": [
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],
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"gene_symbol": "RAP1GAP",
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"hgvs_c": "c.291+663G>A",
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"transcript": "NM_001388207.1",
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},
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],
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"intron_rank": 10,
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"gene_symbol": "RAP1GAP",
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],
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},
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],
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"gene_symbol": "RAP1GAP",
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},
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"consequences": [
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],
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"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "RAP1GAP",
"gene_hgnc_id": 9858,
"hgvs_c": "c.483+663G>A",
"hgvs_p": null,
"transcript": "NM_001388292.1",
"protein_id": "NP_001375221.1",
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"feature": null
},
{
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 28,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "RAP1GAP",
"gene_hgnc_id": 9858,
"hgvs_c": "c.291+663G>A",
"hgvs_p": null,
"transcript": "NM_001350524.2",
"protein_id": "NP_001337453.1",
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}