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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-216542978-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=216542978&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 216542978,
"ref": "G",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000408911.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "ESRRG",
"gene_hgnc_id": 3474,
"hgvs_c": "c.862+21241C>G",
"hgvs_p": null,
"transcript": "NM_001438.4",
"protein_id": "NP_001429.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 458,
"cds_start": -4,
"cds_end": null,
"cds_length": 1377,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5195,
"mane_select": "ENST00000408911.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "ESRRG",
"gene_hgnc_id": 3474,
"hgvs_c": "c.862+21241C>G",
"hgvs_p": null,
"transcript": "ENST00000408911.8",
"protein_id": "ENSP00000386171.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 458,
"cds_start": -4,
"cds_end": null,
"cds_length": 1377,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5195,
"mane_select": "NM_001438.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "ESRRG",
"gene_hgnc_id": 3474,
"hgvs_c": "c.898+21241C>G",
"hgvs_p": null,
"transcript": "ENST00000366937.5",
"protein_id": "ENSP00000355904.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 470,
"cds_start": -4,
"cds_end": null,
"cds_length": 1413,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5365,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "ESRRG",
"gene_hgnc_id": 3474,
"hgvs_c": "c.793+21241C>G",
"hgvs_p": null,
"transcript": "ENST00000359162.6",
"protein_id": "ENSP00000352077.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 435,
"cds_start": -4,
"cds_end": null,
"cds_length": 1308,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5197,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "ESRRG",
"gene_hgnc_id": 3474,
"hgvs_c": "c.793+21241C>G",
"hgvs_p": null,
"transcript": "ENST00000360012.7",
"protein_id": "ENSP00000353108.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 435,
"cds_start": -4,
"cds_end": null,
"cds_length": 1308,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5431,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "ESRRG",
"gene_hgnc_id": 3474,
"hgvs_c": "c.793+21241C>G",
"hgvs_p": null,
"transcript": "ENST00000361395.6",
"protein_id": "ENSP00000354584.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 435,
"cds_start": -4,
"cds_end": null,
"cds_length": 1308,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5216,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "ESRRG",
"gene_hgnc_id": 3474,
"hgvs_c": "c.793+21241C>G",
"hgvs_p": null,
"transcript": "ENST00000366938.6",
"protein_id": "ENSP00000355905.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 435,
"cds_start": -4,
"cds_end": null,
"cds_length": 1308,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5274,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ESRRG",
"gene_hgnc_id": 3474,
"hgvs_c": "c.793+21241C>G",
"hgvs_p": null,
"transcript": "ENST00000366940.6",
"protein_id": "ENSP00000355907.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 435,
"cds_start": -4,
"cds_end": null,
"cds_length": 1308,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5314,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ESRRG",
"gene_hgnc_id": 3474,
"hgvs_c": "c.793+21241C>G",
"hgvs_p": null,
"transcript": "ENST00000487276.5",
"protein_id": "ENSP00000419155.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 435,
"cds_start": -4,
"cds_end": null,
"cds_length": 1308,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3015,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ESRRG",
"gene_hgnc_id": 3474,
"hgvs_c": "c.793+21241C>G",
"hgvs_p": null,
"transcript": "ENST00000493603.5",
"protein_id": "ENSP00000419594.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 435,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ESRRG",
"gene_hgnc_id": 3474,
"hgvs_c": "c.793+21241C>G",
"hgvs_p": null,
"transcript": "ENST00000493748.5",
"protein_id": "ENSP00000417374.1",
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"cds_start": -4,
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"feature": null
},
{
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"strand": false,
"consequences": [
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],
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"gene_symbol": "ESRRG",
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"transcript": "ENST00000475275.5",
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},
{
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"strand": false,
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],
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"gene_symbol": "ESRRG",
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"hgvs_c": "c.898+21241C>G",
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"transcript": "NM_001243518.2",
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},
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],
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"gene_symbol": "ESRRG",
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},
{
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],
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"gene_symbol": "ESRRG",
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"transcript": "NM_001134285.3",
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},
{
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],
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"exon_count": 9,
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"gene_symbol": "ESRRG",
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"hgvs_c": "c.793+21241C>G",
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},
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],
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"gene_symbol": "ESRRG",
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"hgvs_c": "c.793+21241C>G",
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"transcript": "NM_001243510.3",
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},
{
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],
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"exon_count": 8,
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"gene_symbol": "ESRRG",
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"hgvs_c": "c.793+21241C>G",
"hgvs_p": null,
"transcript": "NM_001243511.3",
"protein_id": "NP_001230440.1",
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},
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],
"exon_rank": null,
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"gene_symbol": "ESRRG",
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"transcript": "NM_001243512.1",
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],
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},
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"consequences": [
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],
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"gene_symbol": "ESRRG",
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"hgvs_c": "c.793+21241C>G",
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"transcript": "NM_001243515.2",
"protein_id": "NP_001230444.1",
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"feature": null
},
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ESRRG",
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"protein_id": "NP_001230448.1",
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"strand": false,
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"intron_variant"
],
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"exon_count": 7,
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"gene_symbol": "ESRRG",
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"transcript": "XM_047449403.1",
"protein_id": "XP_047305359.1",
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"aa_start": null,
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"aa_length": 442,
"cds_start": -4,
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"cdna_start": null,
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"feature": null
}
],
"gene_symbol": "ESRRG",
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"dbsnp": "rs12145418",
"frequency_reference_population": 0.000026327567,
"hom_count_reference_population": 0,
"allele_count_reference_population": 4,
"gnomad_exomes_af": null,
"gnomad_genomes_af": 0.0000263276,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": 4,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.8600000143051147,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.86,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.686,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -4,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4_Strong",
"acmg_by_gene": [
{
"score": -4,
"benign_score": 4,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "ENST00000408911.8",
"gene_symbol": "ESRRG",
"hgnc_id": 3474,
"effects": [
"intron_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.862+21241C>G",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}